| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | 97574 = | 5 (0.330) | 3 (0.210) | 3/276 | 1.8 | 38.1% | coding (488/1317 nt) | murD | UDP‑N‑acetylmuramoyl‑L‑alanine:D‑glutamate ligase |
| ? | NC_000913_3_vch_pgi | 97595 = | 5 (0.350) | coding (509/1317 nt) | murD | UDP‑N‑acetylmuramoyl‑L‑alanine:D‑glutamate ligase | |||||
CACGCTAGTGGGTGAAATGGCGAAAGCGGCGGGGGTTAACGTTGGTGTGGGTGGCAATATTGGCCTGCCTGCGTTGATGCTACTGGATGATGAGTGTGAACTGTACGTGCTGGAACTGTCGAGCTTCCAGCTGGAAACCACCTCCAGCTTACAGGCGGTAGCAGCGACCATTCTGAACGTGACTGAAGATCATATGGATCGCTATCCGTTTGGTTTACAACAGTATCGTGCAGCAAAACTGCGCATTTACGAAAACGCGAAAGTTTGCGTG > NC_000913_3_vch_pgi/97446‑97716 | attaaccacgcaaactttcgcgttttcgtaaatgcgcagttttgctgcacgatactgttgtaaaccaaacggatagcgatccatatgatcttcagtcacgttcagaatggtcgctgctaccgcctgtaAGCTGGAAACCACCTCCAGCt > 1:225178‑M1/129‑149 (MQ=255) gTGAAATGGCGAAAGCGGCGGGGGTTAACGTTGGTGTGGGTGGCAATATTGGCCTGCCTGCGTTGATGCTGCAGGATGATGAGTGAGAACTGTACGTGCTGGAACTGTCGAGCTACCAGCTGGAAACCACCTCCAGCTTACAGGCGGTa > 1:237103/1‑149 (MQ=255) aaacggatagcgatccatatgatcttcagtcacgttcagaatggtcgctgctaccgcctgtaAGCTGGAAACCACCTCCAGCTTACAGGCg < 1:68622‑M1/29‑1 (MQ=255) aaacggatagcgatccatatgatcttcagtcacgttcagaatggtcgctgctaccgcctgtaAGCTGGAAACCACCTCCAGCTTACAGGCg > 2:68622‑M1/63‑91 (MQ=255) ggaCGGGCTGGAACTGTCGAGCTTCCAGCTGGAAACCACCTCCAGCTTACAGGCGGTAGCAGCGACCATTCTGAACGTGACTGAAGATCATATGGATCGCTATCCGTTTGGTTTACAACAGTATCGTGCAGCAAAACTGCGCATTTACg < 1:25091/147‑1 (MQ=255) aCGTGCTGGAACGGTCGAGCTTCCAGCTGGAAACCACCTCCAGCTTACAGGCGGTAGCAGCGACCATTCTGAACGTGACTGAAGATCATATGGATCGCTATCCGTTTGGTTTACAACAGAATCGTTGAGCAAAACTGCGCATTTACGaa < 2:164193/149‑1 (MQ=255) gTGCTGGAACTGTCGAGCTTCCAGCTGGAAACCACCTCCAGCTTACAGGCGGTAGCAGCGACCATTCTGAACGTGACTGAAGATCATATGGATCGCTATCCGTTTGGTTTACAACAGTATCGTGCAGCAAAACTGCGCATTTACGaaaa > 1:143702/1‑149 (MQ=255) gaccTGTCGAGCTTCCAGCTGGAAACCACCTCCAGCTTACAGGCGGTAGCAGCGACCATTCTGAACGTGACTGAAGATCATATGGATCGCTATCCGTTTGGTTTACAACAGTATCGTGCAGCAAAACTGCGCATTTACGAAAACGCGaa < 2:83839/146‑1 (MQ=255) ggttctAGCTGGAAACCACCTCCAGCTTACAGGCGGTAGCAGCGGCCATTCTGAACGGGACTGAAGATCATATGGATCGCTATCCGTTTGGTTTACAACAGTATCGTGCAGCAAAACTGCGCATTTACGAAAACGCGAAAGTTTGCGTg > 2:127208‑M1/7‑149 (MQ=255) | CACGCTAGTGGGTGAAATGGCGAAAGCGGCGGGGGTTAACGTTGGTGTGGGTGGCAATATTGGCCTGCCTGCGTTGATGCTACTGGATGATGAGTGTGAACTGTACGTGCTGGAACTGTCGAGCTTCCAGCTGGAAACCACCTCCAGCTTACAGGCGGTAGCAGCGACCATTCTGAACGTGACTGAAGATCATATGGATCGCTATCCGTTTGGTTTACAACAGTATCGTGCAGCAAAACTGCGCATTTACGAAAACGCGAAAGTTTGCGTG > NC_000913_3_vch_pgi/97446‑97716 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |