| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913_3_vch_pgi | 2,393,422 | Δ13 bp | coding (1613‑1625/1842 nt) | nuoL ← | NADH:ubiquinone oxidoreductase, membrane subunit L |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913_3_vch_pgi | 2393422 | 2393434 | 13 | 16 [0] | [0] 16 | nuoL | NADH:ubiquinone oxidoreductase, membrane subunit L |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | = 2393421 | 0 (0.000) | 16 (1.070) | 15/288 | 0.1 | 100% | coding (1626/1842 nt) | nuoL | NADH:ubiquinone oxidoreductase, membrane subunit L |
| ? | NC_000913_3_vch_pgi | 2393435 = | 0 (0.000) | coding (1612/1842 nt) | nuoL | NADH:ubiquinone oxidoreductase, membrane subunit L | |||||
TCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGGTAATTTCCAGGGTC > NC_000913_3_vch_pgi/2393287‑2393574 | cagatagccgttctcacttaacagtagacctttacctgaaaagcgggaaaggacagccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagc < 2:228412‑M2/1‑1 (MQ=255) ttaacagcagacctttacctgcaaagcgggaaaggacagccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGc > 2:210606‑M2/132‑149 (MQ=255) gacctgtaccggcaaagcgggaaaggacagccgggatgttcatcattgagttcagcggatcgggtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGcccagcaggc < 2:180339‑M2/27‑3 (MQ=255) gcaaagcgggaaaggacagccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCa > 1:180544‑M2/112‑149 (MQ=255) gcgggaaaggacagccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaaatcttaggcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGtt < 1:51718‑M2/43‑1 (MQ=255) gacagccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCGGGTGCCCGGCAGAGGACCCGGCGCACTATTGGCGATCGa > 2:40898‑M2/98‑149 (MQ=255) acggccggggtgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCATTGTTGGCGATGGAg < 2:104367‑M2/53‑1 (MQ=255) ccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCa < 2:113220‑M2/57‑1 (MQ=255) cagtgagttcagcggatcgcgtttcagccaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGttt < 1:126613‑M2/70‑1 (MQ=255) attgagttcagcggatcgcgcttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacgtccagCCTCGGACCACCAGGGGGCCAGCAGACGGCCCGGCGCACTGTTGGCGAGGGAGGGCCCCAGACTTCgtttt > 2:230797‑M2/79‑148 (MQ=255) gcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCcagca > 1:14569‑M2/54‑149 (MQ=255) gcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGAGCTCTCTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCcagca < 1:251815‑M2/96‑1 (MQ=255) acccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACGAGGTGCGGAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCGGCCAGCAGAATGCCGaccac > 1:142357‑M2/41‑149 (MQ=255) acactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCAAAGCCAGGCTGCCAGCGGAATGCCGACCACAGCGACCCCGCCAGAGGtag > 1:3819‑M2/21‑148 (MQ=255) tttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGGTAATTTc > 1:150046‑M2/17‑149 (MQ=255) tacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACGCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCCGCGGTAATTCccaggagc > 2:177516‑M2/10‑146 (MQ=255) | TCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGGTAATTTCCAGGGTC > NC_000913_3_vch_pgi/2393287‑2393574 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |