| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | 1411899 = | 20 (1.040) | 4 (0.250) | 4/238 | 1.8 | 24.0% | coding (50/936 nt) | ttcA | tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| ? | NC_000913_3_vch_pgi | = 1434958 | 9 (0.570) | pseudogene (51/51 nt) | ttcC | pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related | |||||
CTGCAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTT > NC_000913_3_vch_pgi/1411760‑1412041 | ctgcAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACACAGACGGTTTTGTAATTTGTTCAGGt > 1:305477/1‑149 (MQ=255) gcgcAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGtt < 1:292777/149‑1 (MQ=255) cgcAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTGTTGttc > 1:126957/1‑149 (MQ=255) agagtggattttctgagcttattgttgtcgctgatgatatttaacacattgaaaaataagtaaaatacttatgagtcagagagttgtgatttttgcccttacTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTg > 1:151121‑M1/103‑149 (MQ=255) tttACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTCTAATTTGTTCCGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGcc > 2:289556/1‑148 (MQ=255) ccccGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCattatt < 1:108883/149‑1 (MQ=255) ggAGAGGCAAACCATGATGTGATCGCCTTCTTCAATCTTATTGAAGTTAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAg < 2:134159/149‑1 (MQ=255) tagcttattgttgtcgctgatgatatttaacacattgaaaaataagtaaaatacttatgagtcagagagttgtgatttttgcccttacTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTtc < 1:238449‑M1/61‑1 (MQ=255) gggaaaaCCATGATGCTATCGCCTTTTTCAATCAGATTGAAGTCAGCAATTGCTTTGCCCACGTTACGACGCAGTCGTTTTTTTAATTTGTTTAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTtct < 2:225990/145‑1 (MQ=255) gCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGAAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTctct > 2:272538/1‑149 (MQ=255) tgagcGCCTTCTTCAATCATATTGAAGTCAGCGATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCTGGTTTTATTGTTCTTTCTTTGTGATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATggg < 2:251274/145‑1 (MQ=255) cGATCGCTTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGGACTAAATggg < 2:211159/149‑1 (MQ=255) cGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATggg < 1:9749/149‑1 (MQ=255) cGATCGCCTTCTTCAATCATATTGAAGGCAGCAATGGCTTCGACCACAACAAAACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATggg < 1:10059/149‑1 (MQ=255) gCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCaaa < 1:340660/149‑1 (MQ=255) tttaacacattgaaaaataagtaaaatacttatgagtcagagagttgtgatttttgcccttacTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTgg < 2:20569‑M1/86‑1 (MQ=255) taaatattatTTAAGTCATTAATGGTTTCGCCCCCGTTACGTCGCTGCTGTTTTTGTTATTTGTTCAGGTTGTATTGTTCTTTCTTTTTAATTTTTTGTTTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTggggg < 2:247996/142‑1 (MQ=255) aaTCATATTGAAGTCAGCAATGACTCCGTCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTGCTAAATGGGGCAGATTTGGGCCa > 2:278573/1‑149 (MQ=255) tacttatgagtcagagagttgtgatttttgcccttacTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAAcc > 2:238449‑M1/38‑149 (MQ=255) cccACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCCTTGTAATTTGTGCATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTCACAACTCCCATAACCCCGCAtt > 2:18538/1‑149 (MQ=255) gTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCCTTCAACATGGCTATCTATtcg > 1:89796/1‑149 (MQ=255) gTTTTTGTAATTTGTTCAGGGTGGATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTtcg > 2:183273/1‑149 (MQ=255) ttGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTcgtcgt > 2:203643/1‑149 (MQ=255) tGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCCACTACCCTATCCCCGCATTCAACATGGCTATCTGTTCGTCGtt < 2:252608/149‑1 (MQ=255) | CTGCAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTT > NC_000913_3_vch_pgi/1411760‑1412041 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |