| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | 3042303 = | NA (NA) | 3 (0.170) | 3/268 | 2.4 | NA | intergenic (+10/+186) | ygfZ/yqfA | iron‑sulfur cluster repair protein, plumbagin resistance/hemolysin III family HylIII inner membrane protein |
| ? | NC_000913_3_vch_pgi | 3042332 = | NA (NA) | noncoding (12/155 nt) | REP210 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP210 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
TGCGGTAAAACTGGAAGATGGTCAGGTCGTGGTACAGGTCGTCATGAATAACGATATGGAACCGGATAGCATCTTCCGCGTACGCGACGATGCGAATACATTGCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGAC > NC_000913_3_vch_pgi/3042155‑3042451 | tGCGGTAAAACTGGAAGATGGTCAGGTCGTGGTACAGGTCGTCATGAATAACGATATGGAACCGGATAGCATCTTCCGCGTACGCGACGATGCGAATACATTGCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTAt > 1:251929/1‑149 (MQ=255) tttgtaggcctgataagccgggccagcgtcgcatcaggcatcggagcacaactgccggattcggcgtgaacgccttatccgatctacgggcctcgtccctgttgtgataaaggcatcaaatcccagacatgataagacgcgccagcgTc > 2:315675‑M1/148‑149 (MQ=255) tttgtaggcctgataagacgcgcctgcgtcgcatcaggcatcggagcacaactgccggattcggcgtgaacgccttatccgatctacgggcctcgtccctgttgtgataaaggcatcaaatcccagacatgataagacgcgccagcgTc > 1:114170‑M1/148‑149 (MQ=255) tttgtaggcctgataagacgcgccagcgtcgcatcaggcatcggagcacaactgccggattcggcgtgaacgccttatccgatctacgggcctcgtccctgttgtgataaaggcatcaaatcccagacatgataagacgcgccagcgTc > 1:171897‑M1/148‑149 (MQ=255) cagggagaaCGGGGAGGTGGTCGGGGTGGGGTACAGTGTGGCATGAAGAGCGGTAGGGTAGCGGATAGCAGCTACCGTGTATGCGATGATGCGAATACATGGTGTATCGAGCCGTTGCCGTATTCGGTCGAAGAGTAAATCTCTTTATc < 2:325728/142‑1 (MQ=255) tAAAACTGGAAGATGGTCAGGTCGTGGTACAGGTCGTCATGAATAACGATATGGAACCGGATAGCATCTTCCGCGTACGCGACGATGCGAATACATTGCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCAt > 1:184508/1‑149 (MQ=255) cagctgcgcatcaggcatcggagcacaactgccggattcggcgtgaacgccttatccgttctacgggcctcgtccttgttgttatcaaggcatcaaagcccagacatgataagacgcgccagcgTCGCATCAGGCATTTATCGCCTGAt > 1:99889‑M1/125‑149 (MQ=255) gATATGGAACCGGATAGCATCTTCCGCGTACGCGACGATGCGAATACATTGCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGCTGCGACCCTGGCGCGCCTCATCATGTCTg > 2:170097/1‑149 (MQ=255) gATATGGAACCGGATAGCATCTTCCGCGTACGCGACGATGCGAATACATTGCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTg < 1:16142/149‑1 (MQ=255) tgccggattcggcgtgaacgccttatccgatctacgggcctcgtccctgttgtgataaaggcatcaaatcccagacatgataagacgcgccagcgTc > 2:267399‑M1/96‑97 (MQ=255) tgccggattcggcgtgaacgccttatccgatctacgggcctcgtccctgttgtgataaaggcatcaaatcccagacatgataagacgcgccagcgTc < 1:267399‑M1/2‑1 (MQ=255) ggAACCGGATAGCATCTTCCGCGTACGCGACGATGCGAATACATTGAATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCAGGGCGGTCTTATCATGTCTGGGAtt > 1:306885/1‑149 (MQ=255) gAACCGGATAGCATCTTCCGCGTACGCGACGATGCGAATACATTGCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGAttt > 2:59282/1‑149 (MQ=255) gAACCGGATAGCATCTTCCGCGTACGCGACGATGCGAATACATTGCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAACCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGAttt < 1:28537/149‑1 (MQ=255) aCCGGATAGCCTCGTCCGCGTACGCGACGATGCGAATACATTGCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGa < 1:34916/149‑1 (MQ=255) ccGGATAGCATCTTCCGCGTACGCGACGATGCGAATACATTGCATATCGAGCCGCTGGCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGGCTTATCATGTCTGGGATTTGAt > 2:81506/1‑149 (MQ=255) ccGGAACGCATCTCCCCCGTAAGCGACGATGCGCATACATTGCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGAt < 1:93035/149‑1 (MQ=39) cATCTTCCGCGTACGCGACGATGCGAATACATTGCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTg > 2:46947/1‑132 (MQ=255) cATCTTCCGCGTACGCGACGATGCGAATACATTGCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTg < 1:46947/132‑1 (MQ=255) ccGCGTACGCGACGATGCGAATACATTGCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCacaac > 1:76226/1‑149 (MQ=255) gcgACGATGCGAATACATTGCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACACCAGAGAcca > 1:262961/1‑147 (MQ=255) gaTGCGAATACATTGCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTGTCACAACACGGACGAGGcaa > 2:320457/1‑147 (MQ=255) gAATACATTGCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGAAGAGGCAAGTAGa > 1:4164/1‑149 (MQ=255) tACATTGCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGGTCg < 2:184508/149‑1 (MQ=255) cATTGCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGa < 2:76226/149‑1 (MQ=255) tgccgatCGGGCCGCTGCCGTAGTCGCTCGAAGAGGAAATCGCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTAACATGTCTGGGATTTGACGCCGTTATCACAACAGGGACGAGGCCCGTAGATCGGATaa < 1:166729/144‑1 (MQ=255) atatCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATc < 2:90068/46‑1 (MQ=255) atatCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATc > 1:90068/1‑46 (MQ=255) ctgttgtCGCTCCAAGAGCAAATCTCTTTATCGCATCAGGCATTGAGCGCCTGATGCGTCGCTGGCGCGTCTTATCCGGTCTGGGATTTGCTGCCTTTATCACAACAGTGACGACGCCCGTAGATCGGATAAGGCGTTCACGCCGAATc < 2:138059/143‑1 (MQ=255) ccGTATTCGCCCGAAGAGTAAATCTCCTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATc < 1:23747/149‑1 (MQ=255) ccGTACTCGTTCGAAGAGTAACTCTCTTTATCGCACCAGGAATTTAGCGCCGGATGCGACGCTGGCGCGTCTTATCATGTCTTGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATc < 2:138068/149‑1 (MQ=255) gTATTCGCTGGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCg < 2:183760/149‑1 (MQ=255) cagacatgataagacgcgccagcgTCGCATCAGGCATTTATCGCCt < 2:114687‑M1/22‑1 (MQ=255) cagacatgataagacgcgccagcgTCGCATCAGGCATTTATCGCCt > 1:114687‑M1/25‑46 (MQ=255) gCTCGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGtt > 2:69790/1‑149 (MQ=255) cTCGAAGAGAAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTtg < 1:176377/149‑1 (MQ=255) aaGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGCGGCCCGTAGATCGGATAAGGCGTTCACGCCGAGTCCGGCAGTTGTGCt > 2:179437/1‑149 (MQ=255) gagTAAATTTCTTTATCGCATCAGGCATTGATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTcc < 1:321146/149‑1 (MQ=255) tAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGACGCACATCTCCTGCGAGACGCGAGGCAAGCATTGTGTATAAGGCGTTCACGCCGACTCGGTCAGTTGTGCTCCGAt < 2:327422/149‑1 (MQ=16) aaTCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGAAGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGAACGGATACGGCGTTCACACCGAATCCGGAAGTTATGCTCCGATGc > 2:269862/1‑149 (MQ=255) TCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGCCAGTTGTGCTCCGATGCCTGATGCGAc < 1:41977‑M1/149‑1 (MQ=255) | TGCGGTAAAACTGGAAGATGGTCAGGTCGTGGTACAGGTCGTCATGAATAACGATATGGAACCGGATAGCATCTTCCGCGTACGCGACGATGCGAATACATTGCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGAC > NC_000913_3_vch_pgi/3042155‑3042451 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |