| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | = 4001962 | 12 (0.620) | 3 (0.160) | 3/282 | 2.5 | 17.3% | coding (537/951 nt) | corA | magnesium/nickel/cobalt transporter |
| ? | NC_000913_3_vch_pgi | = 4001989 | 17 (0.910) | coding (564/951 nt) | corA | magnesium/nickel/cobalt transporter | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTTCGAAACCAAAATCGAACAGTTGGCAGATGAAATTGAAAATATCTATAGCGACCTGGAGCAGTTGAGCCGGGTGATTATGGAAGGGCATCAGGGCGATGAGTACGACGAGGCGCTCTCCACTCTGGCGGAACTGGAAGATATCGGCTGGAAAGTTCGCCTGTGTCTGATGGATACCCAGCGCGCGCTCAACTTCCTGGTGCGTAAAGCGCGTTTACCGGGTGGGCAACTGGAGCAGGCGCGTGAAATCCTGCGAGATATCGAATCCCTGCTGCC > NC_000913_3_vch_pgi/4001833‑4002108 | gTTCGAAACCAAAAGCGAACGGTTGGCAGTTGAAATTGAAAATTTCTATAGCGACCTGGAGCAGTTGAGCCGGGTGATTATGGAAGGGCATCAGGGCGATGAGGACGACGAGGCGCTCTCCACTCTGGCGGAACTGGAAGATATCGGCt < 1:124478/149‑1 (MQ=255) ttCGAAACCAAAATCGAACAGTTGGCAGATGAAATTGAAAATATCTATAGCGACCTGGAGCAGTTGAGCCGGGTGATTATGGAAGGGCATCAGGGCGAGTATGACGACGAGGCGCTCTCCACTCTGGCGGAACTGGAAGATATCGGCTg > 1:235061/1‑149 (MQ=255) aaaTCGAACAGTTGGCAGATGAAATTGAAAATATCTATAGCGACCTGGAGCAGTTGAGCCGGGTGATTATGGAAGGGCATCAGGGCGATGAGTACGACGAGGCGCTCTCCACTCTGGCGGAACTGGAAGATATCGGCTGGAAAGTTcgc < 2:232723‑M2/149‑4 (MQ=255) tCGAACAGTTGGCAGATGAAATTGAAAATATCTATAGCGACCTGGAGCAGTTGAGCCGGGTGATTATGGAAGGGCATCAGGGCGATGAGTACGACGAGGCGCTCTCCACTCTGGCGaactttccagccgatatcttccagttccgcca > 1:146099‑M1/1‑116 (MQ=255) tCGAACAGTTGGCAGATGAAATTGAAAATATCTATAGCGACCTGGAGCAGTTGAGCCGGGTGATTATGGAAGGGCATCAGGGCGATGAGTACGACGAGGCGCTCTCCACTCTGGCGaactttccagccgatatcttccagttccgcca < 2:146099‑M1/148‑33 (MQ=255) aCAGTTGGCAGATGAAATTGAAAATATCTATAGCGACCTGGAGCAGTTGAGCCGGGTGATTATGGAAGGGCATCAGGGCGATGAGTACGACGAGGCGCTCTCCACTCTGGCGGAACTGGAAGATATCGGATGGAAAGTTagccaatgtc < 1:100800‑M2/149‑11 (MQ=255) aGTTGGCAGATGAAATTGAAAATATCTATAGCGACCTGGAGCAGTTGAGCCGGGTGATTATGGAAGGGCATCAGGGCGATGAGTACGACGAGGCGCTCTCCACTCTGGCGGAACTGGAAGATATCGGCTGGAAAGTTCGCCTGTGTCTg > 1:197462/1‑149 (MQ=255) gATCAAATCGAAAATATCTATAGCGACCTGGAGTAGTCGAGCCGGGTGATTATGGAAGGGCATCAGGGCGATGGGTACGTCGGGGCGCTTTCCACTCTGGCGGATCTGGAAGATATCGGCTGGAAAGTTCGCCTGTGTCTGATGGATAc < 2:96245/149‑1 (MQ=255) tGAAATTGAAAATATCTATAGCGATCTGGAGCAGTTGAGCCGGGTGATTATGGAAGGGCATCAGGGCGATGAGTACGACGAGGCGCTCTCACCCCTGGCTGAATTGGAAGATATCGGCTGGAAAGTTCGCCTGTGTCTGATGGATAccc < 2:226824/149‑1 (MQ=255) ccTGGAGCAGTTGAGCCGGGTGATTATGGAAGGGCATCAGGGCGATGAGTACGACGAGGCGCTCTCCACTCTGGCGGAACTGGAAGATATCGGCTGGAAAGTTCGCCTGTGTCTGATGGATACCCAGCGCGCGCTCAACTTCCTGGTGc < 1:232723/149‑1 (MQ=255) ttGAGCCGGGTGATTATGGAAGGGCATCAGGGCGATGAGTACGACGAGGCGCTCTCCACTCTGGCGGAACTGGAAGATATCGGCTGGAAAGTTCGCCTGTGTCTGATGGATACCCAGCGCGCGCTCAACTTCCTGGTGCGTAAAGcgcg > 2:289069/1‑149 (MQ=255) ccGGGTGATTATGGAAGGGCATCAGGGCGATGAGTACGACGAGGCGCTCTCCACTCTGGCGGAACTGGAAGATATCGGCTGGAAAGTTCGCCTGTGTCTGATGGATACCCAGCGCGCGCTCAACTTCCTGGTGCGTAAAGCGCGTTTAc > 2:99110/1‑149 (MQ=255) aTGGAAGGGCATCAGGGCGATGAGTACGACGAGGCGCTCTCCACTCTGGCGGAACTGGAAGATATCGGCTGGAAAGTTCGCCTGTGTCTGATGGATACCCAGCGCGCGCTCAACTTCCTGGTGCGTAAAGCGCGTTTACCGGGTGGGCa > 2:10765/1‑149 (MQ=255) cATCAGGGCGATGAGTACGACGAGGCGCTCTCCACTCTGGCGGAACTGGAAGATATCGGCTGGAAAGTTCGCCCGTGTCTGATGGATACCCAGCGCGCGCTGAACTTCCTGCTGCGTAAAGCGCGTTCACCGGGCGGCCCACTgcacca > 2:130438/1‑144 (MQ=255) tGAGTACGACGAGGCGCTCTCCACTCTGGCGGAACTGGAAGATATCGGCTGGAAAGTTcgc > 2:103144‑M2/1‑58 (MQ=255) tGAGTACGACGAGGCGCTCTCCACTCTGGCGGAACTGGAAGATATCGGCTGGAAAGTTcgc < 1:103144‑M2/61‑4 (MQ=255) gacgacgAGGCGCTCTCCACTCTGGCGGAACTGGAAGATATCGGCTGGAAAGTTCGCCTGTGTCTGATGGATACCCAGCGCGCGCTCAACTTCCTGGTGCGTAAAGCGCGTTTACCGGGTGGGCAACTGGAGCAGGCGCGTGAAATCCt < 2:301500/148‑1 (MQ=255) acgacgAGGCGCTCTCCCCTCTGGCGGAACTGGAAGATATCGGCTGGAAAGTTCGCCTGTGTCTGATGGATACCCAGCGCGCGCTCAACTTCCTGGTGCGTAAAGCGCGTTTACCGGGTGGGCAACTGGAGCAGGCGCGTGAAATCCTg < 1:267157/149‑1 (MQ=255) gacattggctaactttccatccgatatcttccagttccgccagagtggagagcgcctcgtcgtactcatcgccctgatgcccttccataatcacccggctcaactgctccaggtcgctatagatattttcaatttcatctgccaactgt < 1:100800‑M1/144‑140 (MQ=255) tGGCGGAACTGGAAGATATCGGCTGGAAAGTTcgccagagtggagagcgcctcgtcgtactcatcgccctgatgcccttccataatcacccggctcaactgctccaggtcgctatagatattttcaatttcatctgccaactgttcga < 2:146099‑M2/148‑117 (MQ=255) tGGCGGAACTGGAAGATATCGGCTGGAAAGTTcgccagagtggagagcgcctcgtcgtactcatcgccctgatgcccttccataatcacccggctcaactgctccaggtcgctatagatattttcaatttcatctgccaactgttcga > 1:146099‑M2/1‑32 (MQ=255) gCGaactttccagccgatatcttccagttccgccagagtggagagcgcctcgtcgtactcatcgccctgatgcccttccataatcacccggctcaactgctccaggtcgctatagatattttcaatttcatctgccaactgttcgattt < 2:232723‑M1/149‑147 (MQ=255) gCGaactttccagccgatatcttccagttccgccagagtggagagcgcctcgtcgtactca > 2:103144‑M1/1‑3 (MQ=255) gCGaactttccagccgatatcttccagttccgccagagtggagagcgcctcgtcgtactca < 1:103144‑M1/61‑59 (MQ=255) | GTTCGAAACCAAAATCGAACAGTTGGCAGATGAAATTGAAAATATCTATAGCGACCTGGAGCAGTTGAGCCGGGTGATTATGGAAGGGCATCAGGGCGATGAGTACGACGAGGCGCTCTCCACTCTGGCGGAACTGGAAGATATCGGCTGGAAAGTTCGCCTGTGTCTGATGGATACCCAGCGCGCGCTCAACTTCCTGGTGCGTAAAGCGCGTTTACCGGGTGGGCAACTGGAGCAGGCGCGTGAAATCCTGCGAGATATCGAATCCCTGCTGCC > NC_000913_3_vch_pgi/4001833‑4002108 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |