Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913_3_vch_pgi 1,978,503 Δ776 bp insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913_3_vch_pgi 1978503 1979278 776 13 [0] [0] 13 insB1–insA insB1,insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_vch_pgi = 19785020 (0.000)13 (0.710) 10/274 0.8 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913_3_vch_pgi 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

TGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCA  >  NC_000913_3_vch_pgi/1978360‑1978633
                                                                                                                                              |                                                                                                                                   
tGGGTCTTTAGAATTAGCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCTCTACACGCACATACAACGGAGGGGGGCTGCGATTTTAAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtttaac                                                                                                                               <  2:258315‑M1/149‑7 (MQ=255)
                  tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCCATTACTTAACATAAATGtataagtcatacttttgttttggg                                                                                                             >  1:129715‑M1/1‑125 (MQ=255)
                                        cAACTGTACGCGTCACTACACGCACATACAACGGAGGGGGGCTGTGATTTTCAATACTGCGTGATGCAGATCACAAAAAACACTCAATTACTTAACATAAATGtagaagtcatacttttgttttgggtgtatttcaatctgttaaaaag                                                                                       <  2:76168‑M1/149‑47 (MQ=255)
                                                                 aTACAACGGGGGGGGGCTGCGATATTCAATAATGCGTGATGAAGATCACACAAAACACTCAATTACTTAACATAAATGgataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaa                                                              <  2:14822‑M1/149‑72 (MQ=255)
                                                                     cacGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAACACCACGAACCTGTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatga                                                          <  1:333956‑M1/148‑76 (MQ=255)
                                                                                      actttcaATAATGCGTGATGCAGATCACACAAAACACGCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa                                         <  1:92842‑M1/147‑93 (MQ=255)
                                                                                         ttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg                                      >  2:329933‑M1/1‑54 (MQ=255)
                                                                                                      gATGCAGATCACACACAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaacgtttttcgctacgccagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcaca                         <  1:299635‑M1/149‑109 (MQ=255)
                                                                                                      catGCAGATCACACAAAACAGTCATGTACTTAACCGAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcaca                         <  1:7022‑M1/148‑109 (MQ=255)
                                                                                                          cAGATCAAACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtca                     <  1:206379‑M1/149‑113 (MQ=255)
                                                                                                                 cacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataac              >  1:206516‑M1/1‑30 (MQ=255)
                                                                                                                          cTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttgttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcaacgagcaaataactcaccgtag     >  2:279477‑M1/1‑21 (MQ=255)
                                                                                                                             aaggacttaACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaagta  >  2:175264‑M1/5‑18 (MQ=255)
                                                                                                                                              |                                                                                                                                   
TGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCA  >  NC_000913_3_vch_pgi/1978360‑1978633

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: