| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | = 720667 | 18 (0.980) | 3 (0.190) | 3/252 | 2.1 | 15.5% | coding (85/258 nt) | ybfK | uncharacterized protein |
| ? | NC_000913_3_vch_pgi | = 720649 | 17 (1.060) | coding (67/258 nt) | ybfK | uncharacterized protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTGCCGGAAAAAAGCAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACTGCGGAATACAGGCATATGCCTGTAATACAGAGAGTCAGGAAGACCTGTACGCTGAAGTGCCCTTAGTCGGTAGACTAACGGGCATTGAAGAAGTGAAAGTCGAAGCTATTGCGATGAGCAAACTTCATAATATGAGTTGTCCGCCTTATATGGGGCATAGTGCGGCTGTTA > NC_000913_3_vch_pgi/720521‑720814 | gTGCCAGAAAAAAGCAAAGTTTCCCCTCTGATAAATGAATGAGGTAGATTTCTTTTTTCAGAATGCAGAAACCCTTACCATTCAGTTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACTGCGGAATACAGTCATATGCCTGTAtt < 2:78783‑M1/149‑3 (MQ=255) gCCGGAAAAAAGCAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACTGCGGAATACAGGCATATGCCTGTAATAc < 1:63593/149‑1 (MQ=255) aaaaGCAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACTGCGGAATACAGGCATATGCCTGTAATACAGAGAGt > 1:19251/1‑149 (MQ=255) aGCAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACTGCGGAATACAGGCATATGCCTGTAATACAGAGAGTCAg < 1:209340/149‑1 (MQ=255) ataaataaATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACTGCGGAATACAGGCATATGCCTGTAATACAGAGAGTCAGGAAGACCGGTACGCTGaa > 1:32237/1‑149 (MQ=255) taaatCAGGTATATCGCTTTTTTCAGAATTCAGAAACCCTTACCCGTCAGGTGGCTGATAATACAAGGGGTAACAGAGAATGAGCACTGCGGAATACAGGCATATGCCTGTAATACAGAGAGTCAGGAAGACCTGTACGCTGAAGTGcc < 1:19421/149‑1 (MQ=255) gAATGCAGAAACCCTTACCAGGCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACTGCGGAATACATGCATATGCCTGTAATACAGAGAGTCAGGAAGACCTGTACGCTGAAGTGCCCTTGGTCGGTAGACTAACGGGCAtt < 2:307801/149‑1 (MQ=255) cccTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACTGCGGAATACAGGCATATGCCTGTAATACAGAGAGTCAGGAAGACCTGTACGCTGAAGTGCCCTTAGTCGGTAGACTAACGGGCATTTAAGAAGTGaa < 1:153613/149‑1 (MQ=255) ccAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACTGCGGAATACAGGCATATGCCTGTAATACAGAGAGTCAGGAAGACCTGTACGCTGAAGTGCCCTTAGTCGGTAGACTAACGGGCATTGAAGAAGTGAAAGTCGa > 2:23341/1‑149 (MQ=255) gATAATACAAGGGTTAACAGAGAATGAGCACTGCGGAATACAGGCATATGCCTGTAATACAGAGAGTCAGGAAGACCTGTACGCTGAAGTGCCCTTAGTCGGTAGACTAACGGGCATTGGAGAAGTCAAAGTCGAAACTATTGCGAttg > 2:27047/1‑147 (MQ=255) gATAATACAAGGGTTAACAGAGAATGAGCACTGCGGAATACAGGCATATGCCTGTAATACAGAGAGTCAGGAAGACCTGTACGCTGAAGTGCCCTTAGTCGGTAGACTAACGGGCATTGAAGAAGTGAAAGTCGAAGCTATTGCGATGa < 1:23341/149‑1 (MQ=255) taCAAGGGTTAACAGAGAATGAGCACTGCGGTATACAGGCATATGCCTGTAATACAGAGAGTCAGGAAGACCTGTACGCTGAAGTGCCCTTAGTCGGTAGACTAACGGGCATTGAAGAAGTGAAAGTCGAAGCTATTGCGATGAGCaaa < 1:311730/149‑1 (MQ=255) taCAAGGGTTAACAGAGAATGAGCACTGCGGAATACAGGCATATGCCTGTAttccgcagtgctcattctctgttaacc > 1:118756‑M1/1‑51 (MQ=255) aaGGGTTAACAGAGAATGAGCACTGCGGAATACAGGCATATGCCTGTAATACAGAGAGTCAGGAAGACCTGTACGCTGAATTGCCCTTAGTCGGTAGACTAACGGGCATCGAAGAAGTGAAAGTCGAAGCTATTGCGAt < 1:238763/139‑1 (MQ=255) aaGGGTTAACAGAGAATGAGCACTGCGGAATACAGGCATATGCCTGTAATACAGAGAGTCAGGAAGACCTGTACGCTGAAGTGCCCTTAGTCGGTAGACTAACGGGCATCGAAGAAGTGAAAGTCGAAGCTATTGCGAt > 2:238763/1‑139 (MQ=255) ggTTAACAGAGAATGAGCACTGCGGAATACAGGCATATGCCTGTAttccgcagtgctcattctctgttaacccttgta > 2:118756‑M1/1‑45 (MQ=255) ggTTAACAGAGAATGAGCACTGCGGAATACAGGCATATGCCTGTAATACAGAGAGTCAGGAAGACCTGTACGCTGAAGTGTCCTTAGTCGGTAGACTAACGGGCATTGAAGAAGTGAAAGTCGAAGCTATTGCGATGAGCAAACTTCat < 2:52901/149‑1 (MQ=255) agagAATGAGCACTGCGGAATACAGGCATATGCCTGTAATACAGAGAGTCAGGAAGACCTGTACGCTGAAGTGCCCTTAGTCGGTAGACTAACGGGCATTGAAGAAGTGAAAGTCGAAGCTATTGCGATGAGCAAACTTCataa > 1:289054/1‑144 (MQ=255) agagAATGAGCACTGCGGAATACAGGCATATGCCTGTAATACAGAGAGTCAGGAAGACCTGTACGCTGAAGTGCCCTTAGTCGGTAGACTAACGGGCATTGAAGAAGTGAAAGTCGAAGCTATTGCGATGAGCAAACTTCataa < 2:289054/144‑1 (MQ=255) gAGCACTGCGGAATACAGGCATATGCCTGTAATACAGAGAGTCAGGAAGACCTGTACGCTGAAGTGCCCTTAGTCGGTAGACTAACGGGCATTGAAGAAGTGAAAGTCGAAGCTATTGCGATGAGCAAACTTCATAATATGAGTTGTcc > 1:231652/1‑149 (MQ=255) aGGCATATGCCTGTAATACAGAGAGTCAGGAAGACCTGTACGCTGAAGTGCCCTTAGTCGGTAGACTAACGGGCATTGAAGAAGTGAAAGTCGAAGCTATTGCGATGAGCAAACTTCATAATATGAGTTGTCCGCCTTATATGGGGCAt > 1:167535/1‑149 (MQ=255) tAttccgcagtgctcattctctgttaacccttgtattatcagccacctgactggtaagggtttctgcattctgaaaaaagcaatctacctgatttatttatcagcggggtaactttgcttttttccggcacgatcgatttctcattcga > 1:323491‑M1/1‑2 (MQ=255) | GTGCCGGAAAAAAGCAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTGCTTTTTTCAGAATGCAGAAACCCTTACCAGTCAGGTGGCTGATAATACAAGGGTTAACAGAGAATGAGCACTGCGGAATACAGGCATATGCCTGTAATACAGAGAGTCAGGAAGACCTGTACGCTGAAGTGCCCTTAGTCGGTAGACTAACGGGCATTGAAGAAGTGAAAGTCGAAGCTATTGCGATGAGCAAACTTCATAATATGAGTTGTCCGCCTTATATGGGGCATAGTGCGGCTGTTA > NC_000913_3_vch_pgi/720521‑720814 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |