| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | = 2133461 | NA (NA) | 4 (0.230) | 3/274 | 2.3 | 14.3% | noncoding (30/34 nt) | REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913_3_vch_pgi | 3512601 = | 24 (1.380) | intergenic (‑257/+33) | yhfZ/trpS | putative DNA‑binding transcriptional regulator/tryptophanyl‑tRNA synthetase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCCCGAATCGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGAAGATGGAGTTCAGAATCACCCCTTTCACCGGAATACCGTTTTGCTCAAAGCG > NC_000913_3_vch_pgi/2133330‑2133609 | gcgcGAATCGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGCTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGaa < 2:322372/146‑1 (MQ=255) ccAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTGCATAGGTTGTTCTCCCGGCGTATGAGCTGGTTTGCTTGCCGGATGCGGCGGGAACGCCTTATCCGGCCTACGGGGCGGTCGGAATCCAGCcgtc > 2:25742/1‑149 (MQ=39) ggCATATAGATTGAGATCAGCGGATTGTTGTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTatat < 2:29613/149‑1 (MQ=255) cAGCGGGTTGTTTTTCATAGTGTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGAGGCGGCGTGAACGCCTTATCCGGCCTACTGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGcc < 2:72033/149‑1 (MQ=255) aGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCa > 1:119346/1‑149 (MQ=255) gCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATAAGGCGTTCACGCCGCATCCGGCaa < 2:323967‑M1/82‑3 (MQ=255) gCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATAAGGCGTTCACGCCGCATCCGGCaa > 1:323967‑M1/1‑80 (MQ=255) gATTGTTTTTCCTAGGTTGTTGTCCCGGCTTATGAGCTGGTTTGCTTGCGGGATGATGCGTGGTCGGCTTATCCGGCCTACGGGGCTGGTCGTATGCATACGTCCTTATTGCTCATCCAGCTTGTATTCGTATTCGTGATATCCATact > 2:153331/1‑147 (MQ=255) tttttCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTCTATTCGTATTCGTAATAGCCATAATCCTGa > 1:289901/1‑149 (MQ=255) tttttCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGa > 1:56227/1‑149 (MQ=255) tcgcccGGTTTATGAGCTGGTTTGCTTGCCGGAGGCGGCGTGAACGCCTGATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCgcgg < 2:111239/146‑1 (MQ=255) ctcCCGGTTTATGAGCGGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCTTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCgcggc < 1:33634/149‑1 (MQ=255) ccGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGa > 1:234714/1‑149 (MQ=255) cTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCTGGCCTACGGGGCGGAGCGAATGCAGGCGTCGTCATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGAAGATCGAGTTCa < 1:299527/149‑1 (MQ=255) tttGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATGCGTATTGGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGCAGATGGAGTTCAGAAt > 2:246276/1‑149 (MQ=255) tgcCGGATGCGGCGTGAACGCCTTATCCGGCatgaacaaagcgcaatttgccagcaatagtgaattacggcttcgccacaaaaccaatcgcttcgtacaccgctt < 2:261183‑M1/105‑75 (MQ=255) tgcCGGATGCGGCGTGAACGCCTTATCCGGCatgaacaaagcgcaatttgccagcaatagtgaattacggcttcgccacaaaaccaatcgcttcgtacaccgctt > 1:261183‑M1/1‑31 (MQ=255) ggcgTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGAAGATGGAGTTCAGAATCACCCCTTTCACCGGa > 1:230413/1‑149 (MQ=255) cGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGAAGATGGAGTTCAGAATCACCCCTTTCACCGGAATACCGtt < 2:37074/149‑1 (MQ=255) ccTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGAAGATGGAGTTCAGAATCACCCCTTTCACCGCAATACCGtctt > 2:302438/1‑149 (MQ=255) aTCCGGCatgaacaaagcgcaatttgccagcaatagtgaattacggcttcgccacaaaaccaatcgcttcgtacaccgcttttagcgtacgggaagcgtgcgcgctggctttttccgcgccatctttcatcacctgttgcaggaaggct > 1:175500‑M1/1‑7 (MQ=255) gCatgaacaaagcgcaatttgccagcaatagtgaattacggcttcgccacaaaaccaatcgcttcgtacaccgcttttagcgtacgggaagcgtgcgcgctggctttttccgcgccatctttcatcacctgttgcaggaaggcttcatc < 1:263769‑M1/149‑148 (MQ=255) ccTACGGGGCGGTGCGAATGCAGGCGTCGTTCTTTCGCGTCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGAAGATGGAGTTCAGAATCCCCCCTTTCCCCGGAATACCGTTTTGCTCAAAGCg > 2:312606/1‑149 (MQ=255) | GCCCGAATCGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGAAGATGGAGTTCAGAATCACCCCTTTCACCGGAATACCGTTTTGCTCAAAGCG > NC_000913_3_vch_pgi/2133330‑2133609 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |