| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913_3_vch_pgi | 2,393,422 | Δ13 bp | coding (1613‑1625/1842 nt) | nuoL ← | NADH:ubiquinone oxidoreductase, membrane subunit L |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913_3_vch_pgi | 2393422 | 2393434 | 13 | 20 [0] | [0] 20 | nuoL | NADH:ubiquinone oxidoreductase, membrane subunit L |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | = 2393421 | 0 (0.000) | 20 (1.100) | 16/286 | 0.2 | 100% | coding (1626/1842 nt) | nuoL | NADH:ubiquinone oxidoreductase, membrane subunit L |
| ? | NC_000913_3_vch_pgi | 2393435 = | 0 (0.000) | coding (1612/1842 nt) | nuoL | NADH:ubiquinone oxidoreductase, membrane subunit L | |||||
ATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGG > NC_000913_3_vch_pgi/2393277‑2393560 | aTAGCTGTTCTCACGTAACGGCAGACCTGTACCTGCAAAGCGGGAAAGGACAGACGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCCTGACGAACACTTTGTCATACAGCCAGcgtt < 2:76102‑M1/149‑5 (MQ=255)aTAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgtt < 1:216583‑M1/149‑5 (MQ=255) ttAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATGGCGTTTCAGCAACCCGGCAATACCCAGGAACGGCTTGACGAACACTTTCTCATACAGCCAGcgctgtacccccaggtgc > 2:109655‑M1/1‑131 (MQ=255) ttAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgc > 1:306309‑M1/1‑131 (MQ=255) aaCAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgccc < 1:70089‑M1/149‑21 (MQ=255) acgctaaagcgggAAAGGATCGCCGGGATGTTCATCATTGAGTTCAGCGTATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCGTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggc < 1:148213‑M1/144‑36 (MQ=255) tGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTCTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttataccccccagtgcccggcagacgccccggcgc > 2:249422‑M1/1‑112 (MQ=255) aaGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcgcagcagacggcccggcgcactg > 1:323589‑M1/1‑108 (MQ=255) ggAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggc < 2:306309‑M1/149‑47 (MQ=255) ccGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtca > 2:208107‑M1/1‑92 (MQ=255) ttCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtacaaccaggtgcgcagcagacggcccggcgcactgttggcgatggaggtccccagagca > 2:278059‑M1/1‑84 (MQ=255) tCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccag > 1:210169‑M1/1‑63 (MQ=255) gTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCAAACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttccccagccacaggccggccg > 1:265423‑M1/1‑59 (MQ=255) tttCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATAAAGCCAGcgttgtaccaccaggtgcccagcagacggcacggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctgc > 1:97955‑M1/1‑58 (MQ=255) acacTTTGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtaagtttacccagccacagccaggctgccagcagaatgccgaccaccgcgaccacgccagaggtaa < 1:208107‑M1/149‑130 (MQ=255) tttGTCATACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctgccagcagaatgccgaccaccgcgaccacgccagaggtaatttc > 1:226125‑M1/1‑16 (MQ=255) aTACAGCCAGcgttgtacctccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccggggtacgtttacccagccacagccaggctgccagcagaatgccgaccaccgcgaccacgccagaggtaatttctcgggg > 2:273417‑M1/1‑10 (MQ=255) aTACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctgccagcagaatgcc < 2:167313‑M1/113‑104 (MQ=255) aTACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctgccagcagaatgcc > 1:167313‑M1/1‑10 (MQ=255) aTACAGCCAGcgttgtaccaccaggtgcccagcagacggcccggcgcactgttggcgatggaggtcaccagagtacgtttacccagccacagccaggctgccagcacaatcccgcacaccgcggccgcgccagagggaatttccagggg > 2:181640‑M1/1‑10 (MQ=255) | ATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGG > NC_000913_3_vch_pgi/2393277‑2393560 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |