| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | = 3106539 | 20 (1.090) | 3 (0.170) | 3/274 | 2.3 | 13.3% | coding (826/1257 nt) | nupG | nucleoside transporter |
| ? | NC_000913_3_vch_pgi | = 3106551 | 20 (1.150) | coding (838/1257 nt) | nupG | nucleoside transporter | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGCACAGCTTCGACAAAGATCCGATGTTTGCCAGCAGCTTTATTGTGCAGCATGCGTCAATCATCATGTCGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGATCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCTGGTACTGTCGATGATCGTTTACGGTTGCGCATTCGACTTCTT > NC_000913_3_vch_pgi/3106417‑3106687 | tgaaaaGCTTAGAGTAAGAACCGATGTTGGCCAGCAGCTTTATCTTGCAGCATGCGTCAATCATCATGTCGATTTCGCAGATCTCTGAAACCCTTTTCATTATGACCATGCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAatg < 2:165084/144‑1 (MQ=255) cacaTCTTCGACAAAGATCCGATGTTTGCCAGCAGCTCTATTGTGCAGCATGCGTCAATCATCATGTCGATTTCGCAGATCTCTGAAACCCTGTCCATTCTGACCATCCCGTTCTTCTTAACCCGCTACGGTATTAAAAACGTaataat > 2:246972/1‑149 (MQ=255) gACAAAGATCCGATGTTTGCCAGCAGCTTTATTGTGCAGCATGCGTCAATCATCATGTCGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTCCGGTATTAAGAACGTAGTGATGATCAGtct > 2:180987/1‑147 (MQ=255) aCAAAGATCCGATGTTTGCCAGCAGCTTTATTGTGCAGCATGCGTCAATCATCATGTCGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCCGTAtt > 1:96893/1‑149 (MQ=255) aTGTTTGCCAGCAGCTTTATTGTGCAGCATGCGTCAATCATCATGTCGATTTCGAAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGAt > 1:306327/1‑149 (MQ=255) gTTTGCCAGCAGCTTTATTGTGCAGCATGCGTCAATCATCATGTCGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGATcc < 2:245231/149‑1 (MQ=255) ccAGCAGCTTTATTGTGCAGCATGCGTCAATCATCATGTCGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGATCCTGCGt > 2:215964/1‑149 (MQ=255) agcagcTTTATTGTGGAGCATGCGTCAATCATCATGTCGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGATCCTGCGttt < 2:71897/149‑1 (MQ=255) cagcTTGATTGTGCAGCATGCGTCAATCATCATGTCGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGCATTGTGGCGTGGATCCTGCGTTTTg < 1:293777/149‑1 (MQ=255) cTTTATTGTGCAGCATGCGTCAATCATCATGTCGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCTCTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGATCCTGCGTTTTgcgc < 1:190737/149‑1 (MQ=255) cTTTATTGGGCGCGATGCGTAAATCATTGTGTCGATTTCGCAGATTTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTAttaagaagaacgggatggtcagaatgaacagggtttcagagatctgcgaaa > 2:128685‑M2/1‑98 (MQ=255) tttATTGTGCAGCATGCGTCAATCATCATGTCGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATtgtg < 1:58115/126‑1 (MQ=255) tttATTGTGCAGCATGCGTCAATCATCATGTCGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATtgtg > 2:58115/1‑126 (MQ=255) tATTGTGCAGCATGCGTCAATCATCATGTCGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAtaccgtagcggcttaagaagaacg < 1:92618‑M1/107‑25 (MQ=255) tATTGTGCAGCATGCGTCAATCATCATGTCGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAtaccgtagcggcttaagaagaacg > 2:92618‑M1/1‑83 (MQ=255) aTTGTGCAGCATGCGTCAATCATCATGTCGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGATCCTGCGTTTTGCGCTGtt < 1:296021/149‑1 (MQ=255) catGTCGATTTTGCAGAGCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGATCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGt < 2:53959/149‑1 (MQ=255) tttCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAtaccgtagcggcttaagaagaacgggatggtcagaatgaacagggtttcagaaatctgcgaaatcgacacaatgatttacgcatcgcgcccaataaag > 2:128685‑M1/1‑51 (MQ=255) aTCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGCTGATCAGTATTGTGGCGTGGATCCTGCGTTTTTCGCTGTTTGCTTACGGCGACCCGCCCCCGTTCGGTACTGTActgct > 1:4207/1‑149 (MQ=255) cTGTTCATTCTGATCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGATCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCTGGTACTGTCgat < 1:37555/149‑1 (MQ=255) tCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGATCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCTGGTACTGTCGATGATc < 1:167471/149‑1 (MQ=255) ttCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGATCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCTGGTACTGTCGATGATCGtt > 1:189349/1‑149 (MQ=255) cccGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGATCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCTGGTACTGTCGATGATCGTTTACGGTTgcg > 1:229186/1‑149 (MQ=255) cGTTCTTCTTAAGCCGCTACGGTAttaagaagaacgggatggtcagaatgaacagggtttcagagatctgcgaaatcgacatgatgattgacgcatgctgcacaata < 1:92618‑M2/107‑84 (MQ=255) cGTTCTTCTTAAGCCGCTACGGTAttaagaagaacgggatggtcagaatgaacagggtttcagagatctgcgaaatcgacatgatgattgacgcatgctgcacaata > 2:92618‑M2/1‑24 (MQ=255) aGCCGCTACGGTATTAAGAAGGTAATGCCGATCAGTATTGTGGCGTGGCTCCTGCGTTTTGCGCTGTTTGCTTACGACGACCCGACTCCGTTCGGTACTGTACGTCTGGTACGGTCGATGCTCCTTTACCGATGCGCACTCCActtctt > 2:32615/1‑149 (MQ=255) | TGCACAGCTTCGACAAAGATCCGATGTTTGCCAGCAGCTTTATTGTGCAGCATGCGTCAATCATCATGTCGATTTCGCAGATCTCTGAAACCCTGTTCATTCTGACCATCCCGTTCTTCTTAAGCCGCTACGGTATTAAGAACGTAATGATGATCAGTATTGTGGCGTGGATCCTGCGTTTTGCGCTGTTTGCTTACGGCGACCCGACTCCGTTCGGTACTGTACTGCTGGTACTGTCGATGATCGTTTACGGTTGCGCATTCGACTTCTT > NC_000913_3_vch_pgi/3106417‑3106687 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |