| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | = 1841986 | 19 (1.040) | 3 (0.160) | 3/286 | 2.4 | 13.1% | coding (150/273 nt) | ynjH | DUF1496 family protein |
| ? | NC_000913_3_vch_pgi | = 1842012 | 21 (1.150) | coding (124/273 nt) | ynjH | DUF1496 family protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACTGAGTACAGGGCTGCGCTGACTGCCCGCCTGAACTGAACACTTCTGGCGGTACGTTTACCTCCACGTCCGGACGATAATGCGGGTTAGCCAGTGCAATTAATGGAAATGCTAATACTACGGCGAACAATGCTCGACTCACAGGGAACTCCTTAACGTTAT > NC_000913_3_vch_pgi/1841868‑1842155 | gCTTTACGCGCCGCCAGACCAGCGGCTTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTGCCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACTGAGTACAGGGCTGCGCTGAc < 1:318664/149‑1 (MQ=255) gcgcCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCCTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACTGAGTACAGGGCTGCGCTGACTGCCCGc > 1:50910/1‑149 (MQ=255) gTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACTGAGTACAGGGCTGCGCTGACTGCCCGCCTGAACTGAACACTTCTGGCgg > 1:101868/1‑149 (MQ=255) aTTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACTGAGTACAGGGCTGCGCTGACTGCCCGCCTGAACTGAACACTTCTGGCGGTACGTTTACCTCCACGTCCGGAGGATaa > 1:135519/1‑149 (MQ=255) gcagTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACTGAGTACAGGGCTGCGCTGACTGCCCGCCTGAACTGAACACTTCTGGCGGTACGTTTACCTCCACGTCCGGACGATAATGCggg < 1:263381/149‑1 (MQ=255) cTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACTGAGTACAGGGCTGCGCTGACTGCCCGCCTGAACTGAACACTTCTGGCGGTCCGTTTCCCACCACGTCCGGCCGATAATGCGGGTTAGCCAGt > 2:178499/1‑149 (MQ=255) ttCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACTGAGTACAGGGCTGCGCTGACTGCCCGCCTGAACTGAACACTTCTGGCGGTACGTTTACCTCCACGTCCGGACGATAATGCGGGTTAGCCAGTg < 1:314400/149‑1 (MQ=255) aTTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACTGAGTACAGGGCTGCGCTGACTGCCCGCCTGAACTGAACACTTCTGGCGGTACGTTTACCTCCACGTCCGGACGATAATGCGGGTTAGCCAGTGCAATTAATgg > 1:136898/1‑149 (MQ=255) tACCGCCCCTTCAGAATAATTTTGATCCAGATAAACGCAGCACTGAGTACAGGGCTGCGCTGACTGCCCGCCTGAACTGAACACTTCTGGCGGTACGTTTACCTCCACGTCCGGACGATAATGCGGGTTAGCCAGTGCAATTAATGGaa > 1:111070/1‑149 (MQ=255) aCCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACTGAGTACAGGGCTGCGCTGACTGCCCGCCTGAACTGAACACTTCTGGCGGTACGTTTACCTCCACGTCCGGACGATAATGCGGGTTAGCCAGTGCAATTAATGGaaa > 1:166536/1‑149 (MQ=255) ttCAGAATAATTTTGATCCTGATAAACGCAGCACTGAGTACAGGGCTGCGCTGACTGCCCGCCTGAACTGAACACTTCTGGCGGTACGTTTACCTCCACGTCCGGACGATAATGCGGGTTAGCCAGTGCAATTAATGGAAATGCTAAta > 2:132756/1‑149 (MQ=255) ttCAGAATAATTTTGATCCTGATAAACGCAGCACTGAGTACAGGGCTGCGCTGACTGCCCGCCTGAACTGAACACTTCTGGCGGTACGTTTACCTCCACGTCCGGACGATAATGCGGGTTAGCCAGTGCAATCAATGGAAATGCTAAta > 1:294733/1‑149 (MQ=255) aGAATAATTTTGATCCTGATAAACGCAGCACTGAGTACAGGGCTGCGCTGACTCCCCGCCTGAACTTAACACTTCTGGCGGTACGTTTACCTCCACGTCCGGACGATAATGCGGGTTAGCCAGTGCAATTAATGGCAATGCTAAtacta > 2:118012/1‑149 (MQ=255) ataatTTTGATCCTGATAAACGCAGCACTGAGTACAGGGCTGCGCTGACTGCCCGCCTGAACTGAACACTTCTGGCGGTACGTTTACCTCCACGTCCGGACGATAATGCGGGTTAGCCAGTGCAATTAATGGAAATGCTAATACTACgg > 1:41467/1‑149 (MQ=255) ttttGATCCTGATAAACGCAGCACTGAGTACAGGGCTGCGCTGACTGCCCGCCTGAACTGAACACTTCTGGCGGTACGTTTACCTCCACGTCCGGACGATAATGCGGGTTAGCCAGTGCAATTAATGGAAATGCTAATACTACGGCGaa < 2:136898/149‑1 (MQ=255) ttttGATCCTGATAAACGCAGCACTGAGTACAGGGCTGCGCTGACTGCCCGCCTGAACTGAACACTTCTGGCGGTACGTTTACCTCCACGTCCGGACGATAATGCGGGTTAGCCAGTGCAATTAATGGAAATGCTAATACTACGGCGaa > 2:188597/1‑149 (MQ=255) tCCTGATAAACGCAGCACTGAGTACAGGGCTGCGCttatcaggatcaaaattattctgaaggggcggtaattaaagccgaaggaatactgctgcaatgccagcgtgatga > 1:231474‑M2/1‑35 (MQ=255) tCCTGATAAACGCAGCACTGAGTACAGGGCTGCGCttatcaggatcaaaattattctgaaggggcggtaattaaagccgaaggaatactgctgcaatgccagcgtgatga < 2:231474‑M2/110‑76 (MQ=255) gcagcaCTGAGTACAGGGCTGCGTttatcaggatcaaaattattctgaaggggcggtaattaaagccgaaggaatactgctgcaatgccagcgtgatgacaaaacccttagcactaatccgctggtctggcggcgcgtaaagccataaa < 1:291434‑M2/149‑126 (MQ=255) agcaCTGAGGACAGGGCTGCGCTGACTGCCCGCCTGAACTGAACACTTCTGGCGGTACGTGTACCTCCACGTCCGGACGATAATGCGGTTTAGCCAGTGCAATTAATGGAAATGCTAATACTACGGCGAACAATGCTCGACTCACAggg < 1:89340/149‑1 (MQ=255) gAGTACAGGGCTGCGCTGACTGCGCGCCTGAAGTGAACACTTATGGCGGTACGTTTACCTCCACGTCCGGACGATAATGCGGGTTAGCCAGTGCAATTAATGGAAATGCTAAGACTACGGCGAACAATGCTCGACTCACGGGGAACTcg > 1:256214/1‑148 (MQ=255) gCTGCGCTGACTGCCCGCCTGAACTGAACACTTCTGGCGGTACGTTTACCTCCACGTCCGGACGATAATGCGGGTTAGCCAGTGCAATTAATGGAAATGCTAATACTACGGCGAACAATGCTCGACTCACAGGGAACTCCTTCACGTTa < 1:146396/149‑1 (MQ=255) gCTGCGCTGACTGCCCGCCTGAACTGAACACTTCTGGCGGTACGTTTACCTCCACGTCCGGACGATAATGCGGGTTAGCCACTGCGTGCCGGTGATATGCTAATACTACGGCGAACAATGCTCGACTCACAGGGAACTCCTTAACGTTa > 1:74879/1‑149 (MQ=255) cTGCGCTGACTGCCCGCCTGAACTGAACACTTCTGGCGGTACGTTTACCTCCACGTCCGGACGATAATGCGGGTTAGCCAGTGCAATTAATGGAAATGCTAATACTACGGCGAACAATGCTCGACTCACCGGGAACTCCTTAACGTTAt > 1:1351/1‑149 (MQ=255) | GCTTTACGCGCCGCCAGACCAGCGGATTAGTGCTAAGGGTTTTGTCATCACGCTGGCATTGCAGCAGTATTCCTTCGGCTTTAATTACCGCCCCTTCAGAATAATTTTGATCCTGATAAACGCAGCACTGAGTACAGGGCTGCGCTGACTGCCCGCCTGAACTGAACACTTCTGGCGGTACGTTTACCTCCACGTCCGGACGATAATGCGGGTTAGCCAGTGCAATTAATGGAAATGCTAATACTACGGCGAACAATGCTCGACTCACAGGGAACTCCTTAACGTTAT > NC_000913_3_vch_pgi/1841868‑1842155 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |