| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | 2291329 = | 23 (1.250) | 3 (0.170) | 3/270 | 2.3 | 12.6% | noncoding (177/199 nt) | RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site |
| ? | NC_000913_3_vch_pgi | 2291352 = | 20 (1.160) | intergenic (+205/+6) | narP/ccmH | response regulator in two‑component regulatory system with NarQ/heme lyase, CcmH subunit | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAA > NC_000913_3_vch_pgi/2291205‑2291500 | gATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCct > 1:122218/1‑149 (MQ=255) aTGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCctc < 1:87006/149‑1 (MQ=255) gcTACGCTTATCAGGCCTACGTGGATGCCTCTGCCAAGTGGATTTACACAATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCCACATCGGCCCTCtttt > 2:232408/1‑149 (MQ=18) tACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTttta < 1:297539/149‑1 (MQ=255) cTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTgcg < 2:29648/149‑1 (MQ=255) aCGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACGTTGTCAACAGTCGATCGCGATGGCATCACCAGCGGGCCTCTTTTTATGTACTCTCGTggggc > 1:43691/1‑149 (MQ=25) tcttacctgccaacgatactcgccgtgcggtgattgaacgtagtatcgcgcaggcgatgcaacatttgtcgccgcaggagagtaaataaaaagagGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTgcggc < 2:47218‑M1/48‑1 (MQ=255) tcttacctgccaacgatactcgccgtgcggtgattgaacgtagtatcgcgcaggcgatgcaacatttgtcgccgcaggagagtaaataaaaagagGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTgcggc > 1:47218‑M1/96‑143 (MQ=255) ataaaTTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGtt > 2:84649/4‑149 (MQ=255) tATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGc < 1:97265/149‑1 (MQ=255) acacAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGAta < 2:122218/149‑1 (MQ=255) tAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCACGATGGCATCACCCTTGGGCATCTTTTTATTTACTCTCTTCCGGGTACAAATGTTGCATCGCCGGCGCGATACTACGTTCAAt > 2:190030/1‑149 (MQ=37) gCCGGATAGGGCGTTCACGCCGCATCCGCCATAAACGAAGCGCACTTTGTCAACAGTCTAGCACGATGGGATCGCCATCGGGCTTCGTTTTATTTAATTCCCTCCGGCGCCAACTGTTGCATCGCCTGCGCGATATTCCGTTCCATCAc > 2:75265/1‑149 (MQ=255) gCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTATTTTTATGTACTCTCCTGCGGCGACAAACGTTGCTTCGCCTGCGCGATACTACGTTCAATCAc > 1:288465/1‑149 (MQ=255) cggcATCCTGCATAAACTAAGCGCACTGTGCCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTg < 1:100015/147‑1 (MQ=255) tCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAgg < 1:125249/149‑1 (MQ=255) cATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAaga < 1:106298/149‑1 (MQ=255) aCTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTc < 1:190030/149‑1 (MQ=255) gccgcaggagagtaaataaaaagaggcccgatggtgatgccatcgggcCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAaga > 1:47218‑M2/49‑143 (MQ=255) gccgcaggagagtaaataaaaagaggcccgatggtgatgccatcgggcCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAaga < 2:47218‑M2/95‑1 (MQ=255) gcgcACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAAcat > 1:49175/1‑149 (MQ=255) cACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAAcatcat > 2:121856/1‑149 (MQ=255) aCAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCAcgcg > 1:162354/1‑149 (MQ=255) gcccgatggtgatgccatcgggcCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGATTCAACATCATCTCCCACGCGGCAACGGc > 1:174717‑M2/24‑149 (MQ=255) ATGGCATCACCATCGGGCCTCTTTTTATTTACGCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGc > 2:43691‑M1/1‑149 (MQ=255) aCCAGCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCgc < 1:84649/149‑1 (MQ=255) catcgggcCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCCACATCATCTCCCACGCGGCAACGGCCTCGCCAAATCgctg > 2:112758‑M2/9‑149 (MQ=255) catcgggcCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCgctg > 2:32976‑M2/9‑149 (MQ=255) ggcCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACCGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCACCGGCTTCGCCAAATCactgctgct > 1:286834‑M2/4‑149 (MQ=255) ctctTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCCGCAACGGCTTCGCCAAATCGCTGCTGCTCaa > 1:43482/1‑149 (MQ=255) ctctTTTCATTTACCTTCCGGGGGCGACAAATGTTGCATCGCCTGCGGGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCaa < 1:178849/149‑1 (MQ=255) | GATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCCTCTTTTTATTTACTCTCCTGCGGCGACAAATGTTGCATCGCCTGCGCGATACTACGTTCAATCACCGCACGGCGAGTATCGTTGGCAGGTAAGAGTTTCAACATCATCTCCCACGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAA > NC_000913_3_vch_pgi/2291205‑2291500 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |