| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | 724063 = | 23 (1.040) | 3 (0.140) | 3/268 | 2.9 | 12.6% | coding (352/2685 nt) | kdpD | fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein |
| ? | NC_000913_3_vch_pgi | 724085 = | 20 (0.950) | coding (330/2685 nt) | kdpD | fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACGGTTTCCCGTACCTGAATTCCGGTGACGCCGCTGACCACATCATTCAGACTTTCCAGATGCTGAACGTTGACGGTAGTGAAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACC‑TGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCC > NC_000913_3_vch_pgi/723918‑724199 | aCGGTTTCCCGTACCTGAATTCCGGTGACGCCGCTGACCACATCATTCAGACTTTCCAGATGCTGAACGTTGACGGTAGTGAAAACATCAATGCCAGCTTCCAGCAGTTCTTCGCTACCCCGCCAGCGTCTGGAATGCCGGGACCC‑Tgg > 1:14079/1‑149 (MQ=255) cGGCTTCCCCTACCTGAATGCCGGTGACGCCGCTGACCACATCATTCAGACTTTCCAGATGTTGAACGTTGACGGTAGTGAAAACAGCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACC‑TGgc < 1:374797/149‑1 (MQ=255) tttCCCGTACCTGAATTCCGGTGACGCCGCTGACCACATCATTCAGACTTTCCAGATGCTGAACGTTGACGGTAGTGTACACATCACTGCCAGCTTCCAGCACTTCTTCGCTATCGTACCAGCGTTTGGGATCACGGTAACC‑TGCCGCa > 2:273161/1‑149 (MQ=255) cccGTACCTTAATTCCGGTGACGCCGCTGACCACATCATTCTGACTTTCCAGATGCTGAACGTTGATGGTAGTGAAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACC‑TGGCGCATTa < 1:165448/149‑1 (MQ=255) ttCCGGTGACGACGCTGACCACATCATTCAGACTTTCCAGATGCTGAACGTTGACGGTAGTGAAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGCACG‑TGGAGCTTCACGGTGCGCCAGt > 1:247403/1‑149 (MQ=255) gaagggctggctgttctgccgttaaaacgccaggcgtaccgtgggcggcatatcagcgagtttgatctcgatgccgccctcgcccgccgcccggcgctgatcttaatggacgaaCCTGGCGCATTACTGTGCGCCAGTTCGTCCATTaa > 2:300323‑M1/115‑149 (MQ=255) catcatTCAGACTTTCCAGATGCTGAACGTTGACGGTAGTGAAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACC‑TGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGcc > 1:260843/1‑149 (MQ=255) atTCAGACTTTCCAGATGCTGAACGTTGACGGTAGTGAAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACC‑TGGCGCATTACTGTGCGCCAGTTCGTCCATTa < 2:66857/134‑1 (MQ=255) atTCAGACTTTCCAGATGCTGAACGTTGACGGTAGTGAAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACC‑TGGCGCATTACTGTGCGCCAGTTCGTCCATTa > 1:66857/1‑134 (MQ=255) cAGACTTTCCAGATGCCGAACGTTGACGGTAGTGAAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACC‑TGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGggcggc < 2:301727/149‑1 (MQ=255) cAGATGCTGAACGTTGACGGTAGTGAAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACC‑TGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAggg > 1:214398/1‑149 (MQ=255) tGAACGTTGACGGTAGTGAAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACC‑TGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATc > 1:90368/1‑149 (MQ=255) gTTGACGGTAGTGAAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACC‑TGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGcggcgg < 1:352361/130‑1 (MQ=255) gTTGACGGTAGTGAAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACC‑TGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGcggcgg > 2:352361/1‑130 (MQ=255) aGTGAAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACC‑TGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGc < 1:270304/149‑1 (MQ=255) gcgagtttgatctcgatgccgccctcgcccgccgcccggcgctgatcttaatggacgaaC‑TGGCGCATTACTGTGCGCCAGTTc > 2:113406‑M1/60‑84 (MQ=255) gcgagtttgatctcgatgccgccctcgcccgccgcccggcgctgatcttaatggacgaaC‑TGGCGCATTACTGTGCGCCAGTTc < 1:113406‑M1/25‑1 (MQ=255) aTGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACC‑TGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGccc > 1:240905/1‑149 (MQ=255) ttcttcGATATCCTGCCAGCGTTTGGGATGACGGGAACC‑TGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGtt < 1:333597/149‑1 (MQ=255) ttcGATATCCTGCCAGCGTTTGGGATGACGGGAACC‑TGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTa > 1:38014/1‑149 (MQ=255) atatCCTGCCAGCGTTTGGGATGACGGGAACC‑TGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACgg < 1:274772/149‑1 (MQ=255) accccgCCAGCTGTTGGGATGCAGGGAACC‑TGGCGCATTACTGTGCGCCAGTTCGTCCATTCAGAGCAGCCCCGCGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCa < 2:303516/144‑1 (MQ=255) cTGCCAGCGTTTGGGATGACGGGAACC‑TGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGggc > 1:326625/1‑74 (MQ=255) cTGCCAGCGTTTGGGATGACGGGAACC‑TGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGggc < 2:326625/74‑1 (MQ=255) aGCGTTTGGGATGACGGGAACC‑TGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATGTGCCGCCCACGGTACGCCTGGCGTTTTAGCGGCAGCAcagcc > 1:381258/1‑149 (MQ=255) gATGACGGGAACC‑TGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTcc < 2:214398/149‑1 (MQ=255) | ACGGTTTCCCGTACCTGAATTCCGGTGACGCCGCTGACCACATCATTCAGACTTTCCAGATGCTGAACGTTGACGGTAGTGAAAACATCAATGCCAGCTTCCAGCAGTTCTTCGATATCCTGCCAGCGTTTGGGATGACGGGAACC‑TGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCC > NC_000913_3_vch_pgi/723918‑724199 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |