| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | 1429011 = | 30 (1.350) | 3 (0.140) | 3/268 | 2.9 | 9.5% | intergenic (+27/‑38) | lomR/stfR | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein |
| ? | NC_000913_3_vch_pgi | 1429033 = | 29 (1.380) | intergenic (+49/‑16) | lomR/stfR | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGGAGCTGGCGTGCAGTTTAACCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGG > NC_000913_3_vch_pgi/1428864‑1429151 | tccggattttctgaggccagcgtgttcaccaccaccgtggtgctgttacgttttgctttcagctggattgtgcagttctgtaccggttttcctgtgccgtctttcagtacacctgaaatctttacttccatattcaccccacaaaaaAg < 2:69432‑M1/2‑1 (MQ=255)tccggattttctgaggccagcgtgttcaccaccaccgtggtgctgttacgttttgctttcagctggattgtgcagttctgtaccggttttcctgtgccgtctttcagtacacctgaaatctttactgccatattcaccccacaaaaaAg < 2:265697‑M1/2‑1 (MQ=255) ggattttctgaggccagcgtgttcaccaccaccgtggtgctgttacgttttgctttcagctggattgtgcagttctgtaccggttttcctgtgccgtctttcagtacacctgaaatctttactgccatattcaccccacaaaaaAGccc < 1:295024‑M1/5‑1 (MQ=255) tGCAGTTTAACCCGATCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACATCCCGCCGGTTc < 1:247185/149‑1 (MQ=255) ttcaccaccaccgtggtgctgttacgttttgctttcagctggattgtgcagttctgtaccggttttcctgtgccgtctttcagtacacctgaaatctttactgccatattcaccccacaaaaaAGCCCGCCGGTTCAGGCGGGCttttt > 1:69432‑M1/124‑149 (MQ=255) cgaATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGGGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGCTTCAGGCGGGCTTTTTtgt < 2:331487/149‑1 (MQ=255) gaATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTtgtg > 2:374464/1‑149 (MQ=255) aTCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTggg < 1:142857/149‑1 (MQ=255) tCCGTGGCCATTGATATTGCTTATGCAGGCCCCGGCAGTGGCGTCTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTATCACAGTGTTATGACAGCCCGCCGGTTCACGCGGGCTTTTTTGTgggg > 1:298394/1‑149 (MQ=255) ggCCCTTGATCTCGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCCCTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAat < 1:11068/149‑1 (MQ=255) aTTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGGGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGCATCTgg > 2:369073/1‑149 (MQ=255) tGATATTGCTTAGGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCa < 1:144491/149‑1 (MQ=255) tGCTTATGAAGGCCCTGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAg < 1:41811/149‑1 (MQ=255) aaGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTCGCCAGGTAACACAGTGTTATGACCGCCCGACGGTCCAGGCGGGCTTTTTTGTGGGGTGAATATGGAAGTAACTATTTCAgc > 1:80588/1‑148 (MQ=255) gCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGgtgt > 1:204897/1‑149 (MQ=255) cGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGATAATATGGCAGTAAAGATTTCAGCTGTACTg > 2:384659/1‑149 (MQ=255) cAGCGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGaaa < 1:225547/149‑1 (MQ=255) ggttttcctgtgccgtctttcagtacacctgaaatctttactgccatattcaccccacaaaaaAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCa > 2:318263‑M1/64‑107 (MQ=255) ggttttcctgtgccgtctttcagtacacctgaaatctttactgccatattcaccccacaaaaaAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCa < 1:318263‑M1/44‑1 (MQ=255) gACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGTAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCgg < 1:374464/149‑1 (MQ=255) gACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCa < 1:320288/106‑1 (MQ=255) gACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCa > 2:320288/1‑106 (MQ=255) gACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCgg < 1:190719/149‑1 (MQ=255) gACGGTTTCATCGTGGGTGGCGGTTATAAGTTCTGATTAGCCAGGTAACCCAGAGTGGTTTCAACCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCgg < 1:190169/149‑1 (MQ=255) aCGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGa > 2:69521/1‑97 (MQ=255) aCGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGa < 1:69521/97‑1 (MQ=255) tttCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAg > 2:176492/1‑149 (MQ=255) gtagcGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACGGAAAGACGGCACAGGAAAACCGGTACAGaa < 1:312336/145‑1 (MQ=255) aTCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACGGGAAAACCGGTACAGAACt > 1:268203/1‑149 (MQ=255) aTCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACt > 2:239596/1‑149 (MQ=255) tCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTg < 1:176492/149‑1 (MQ=255) tCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCa < 2:204897/149‑1 (MQ=255) cGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAg < 1:15679/149‑1 (MQ=255) ttCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCaa > 2:295024/1‑149 (MQ=255) tAGCCAGGTAACACAGTGGTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTaa < 2:309215/149‑1 (MQ=255) gtTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTTTTTTGTTTTTATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACggtggtgg > 2:39214/1‑149 (MQ=255) | GGGAGCTGGCGTGCAGTTTAACCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGG > NC_000913_3_vch_pgi/1428864‑1429151 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |