| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | 4317920 = | NA (NA) | 4 (0.190) | 4/270 | 2.5 | NA | noncoding (1/83 nt) | REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_vch_pgi | 4317952 = | NA (NA) | noncoding (33/83 nt) | REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
GGCCGTGGAGCACCACGCATTCGCCCGCGTTGACGGTGAGCGAGGCGCGATTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTATACGGATGATGCGGGTCGTCG > NC_000913_3_vch_pgi/4317775‑4318066 | ggCCGTGGAGCACCACGCATTCGCCCGCGTTGACGGTCAACCAGACTCGCTTGAGGACGGGCGTGCTCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCg > 2:83420/1‑149 (MQ=255) tggagagttggttaaccgaccgcgtgctcgacgacccgcatcatccgtatacacagctgctggtgtcatcggttttgcagaattgagccggtgccggatgcggcgtaaacgccttatccggcctacaaatgcgctccccgtagGTCGGa > 1:79811‑M1/144‑149 (MQ=255) tggagagtgggttaaccgaccgcgtgctcgacgacccgcatcatccgtatacacagctgctggtgtcatcggttttgcagaattgagccggtgccggatgcggcgtaaacgccttatccggcctacaaatgcgctccccgtagGTCGGa > 1:239276‑M1/144‑149 (MQ=255) cGTGGAGCACCACGCATTCGCCCGCGTTGACGGTGAGCGAGGCGCGATTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGAt < 2:119861/149‑1 (MQ=255) gTGGGGCACCACGCATTCGCCCTCGTTCACGGTGAGCGAGGCGCGATTGAGGACGGCCAGGCGCACGCCGATCTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCA‑TTTTCGCCTCGTGGTTCGGGTCTCGGATGc < 2:331768/149‑1 (MQ=255) gAGCACCACGCATTCGCCCGCGTTGACGGTGAGCGAGGCGCGATTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGa < 1:253098/149‑1 (MQ=255) cacGCATTCGCCCGCGTTGACGGTGAGCGAGGCGCGATTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGa > 1:136936/1‑149 (MQ=255) cacGCATTCGCCCGCGTTGACGGTGAGCGAGGCGCGATTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGa > 1:77037/1‑149 (MQ=255) acGGATCCGCCCAGGTTTTCGGTGAGCGAGGCGCGATTGAGGACGGGCAGGCGCACGCCGTTTAGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGAc < 2:354790/149‑1 (MQ=255) tCGCCCGCGTTGACGGTGAGCGAGGCGCGATTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCt < 2:288462/149‑1 (MQ=255) tCGCCCGCGTTGACGGTGAGCGAGGCGCGATTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCt < 2:288447/149‑1 (MQ=255) gCCCGCGTTGACGGTGAGCGAGGCGCGATTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTa > 2:31002/1‑149 (MQ=255) cgtgctcgacgacccgcatcatccgtatacacagctgctggtgtcatcggttttgcagaattgagccggtgccggatgcggcgtaaacgccttatccggcctacaaatgcgctccccgtagGTCGGATGCGACGCTGACGCGTCTTATc > 1:144938‑M1/122‑149 (MQ=255) cgTTGACGGTGAGCGAGGCGCGATTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGa < 1:105829/149‑1 (MQ=255) cgacgacccgcatcatccgtatacacagctgctggtgtcatcggttttgcagaattgagccggtgccggatgcggcgtaaacgccttatccggcctacaaatgcgctccccgtagGTCGGATGCGACGCTGACGCGTCTTATCCGACCt > 1:317441‑M1/116‑149 (MQ=255) gTGAGCGAGGCGCGATTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCACCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACggg < 1:173256/149‑1 (MQ=255) gTGAGCGAGGCGCGATTGAGGACGGGCAGGCCCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACggg < 2:44512/149‑1 (MQ=255) gATTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTa > 1:200220/1‑149 (MQ=255) ttGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAgg > 1:48322/1‑149 (MQ=255) ttGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGGTTTACTGACGTTTTGTACGTTAATCATTTTTAGCCTCGTGGTACGGGTGGCGGGTGCCACGCTGACGCGTCTTAACCGACCTACGGGGAGCGCGTGTGTAgg > 2:141951/1‑149 (MQ=255) gAGGACGGGCAGGCGCGCGCCGTTTTGCTGTTGCAGGATGAAGGTTTTACCGACGTTTTGTACGTTAATCATTTTTCGCCTCGTCGTTCGTGTGTCGGATGCGACGCTGACGCGTCTTATCCGCCCTACGGGGAGCGCATTTGTAGGcc < 2:321638/149‑1 (MQ=255) ggACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCACTGGTAGGccag > 1:244396/1‑147 (MQ=255) ggCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAg < 2:136936/149‑1 (MQ=255) gcgcgtcGTTTTGCTGGGGCAGGATGAAGGTTTTACTGTCGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGGCCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTa < 2:375746/143‑1 (MQ=37) gCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGTCGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTGTAcgcc < 2:124995/149‑1 (MQ=255) ttttGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCAt > 1:137595/1‑149 (MQ=255) tttGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATc < 2:77037/149‑1 (MQ=255) gTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAcc < 1:196267/149‑1 (MQ=255) tGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCg > 1:123957/1‑149 (MQ=255) tGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGGTTACGCCGCATCCGGCACCg > 1:102316/1‑149 (MQ=255) ggTTTTACTGACGTTTTGTACGTTAACCATTTGACGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTAGCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTg < 1:135665/149‑1 (MQ=255) tgccGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGGCGGCCGCGGCGCTGCCCCGCCTTATCCCACCTACCCGCCGCCCCTTTCTCGCCCGGATAAGCCGTTTACGCCCCCTCCGGCACCCGCCCACTCCTGCAACACCg > 2:22025/4‑149 (MQ=255) tGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGa > 1:207581/1‑102 (MQ=255) tGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGa < 2:207581/102‑1 (MQ=255) gACGTTTTGGACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGa < 2:220595/149‑1 (MQ=255) aacgccttatccggcctacaaatgcgctccccgtagGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAgc < 2:17663‑M1/43‑1 (MQ=255) aacgccttatccggcctacaaatgcgctccccgtagGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAgc > 1:17663‑M1/37‑79 (MQ=255) ttAATCTTGTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTCTACGTCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCagcagc < 2:261576/149‑1 (MQ=255) ttAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCagcagc < 2:200220/149‑1 (MQ=255) tAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCt < 2:48322/149‑1 (MQ=255) tCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTATACGgatgat > 1:328922/1‑149 (MQ=255) ggTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTATACGGATGATGCgg < 1:15360/149‑1 (MQ=255) ggTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTATACGGATGATGCgg < 2:123957/149‑1 (MQ=255) ggTGTGGGATGCGAAGCTGACGCGTCTTATCGGGGCTACGGGGAGCGCATTTGTAGGCCGGATAAGTCGTTTACGCCGCATCCGGCAGCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTATACGGATGATTCGGgtcgtc < 2:79632/149‑1 (MQ=38) ggTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTATACGGATGATGCGGgtcgtc > 2:262808/1‑149 (MQ=255) ggTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTATACGGATGATGCGGgtcgtc > 2:240247/1‑149 (MQ=255) gtgtCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTATACGGATGATGCGGGtcgtcg > 2:357054/1‑149 (MQ=255) | GGCCGTGGAGCACCACGCATTCGCCCGCGTTGACGGTGAGCGAGGCGCGATTGAGGACGGGCAGGCGCACGCCGTTTTGCTGGTGCAGGATGAAGGTTTTACTGACGTTTTGTACGTTAATCATTTTTCGCCTCGTGGTTCGGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTATACGGATGATGCGGGTCGTCG > NC_000913_3_vch_pgi/4317775‑4318066 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |