| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | 4344816 = | NA (NA) | 4 (0.190) | 4/266 | 2.5 | NA | intergenic (+23/+116) | melB/yjdF | melibiose:sodium symporter/DUF2238 family inner membrane protein |
| ? | NC_000913_3_vch_pgi | 4344845 = | NA (NA) | noncoding (28/95 nt) | RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
CGCCTCAATGGTGACACGCTGCGCAGGATCCAGATCCATCTGCTGGATAAATATCGCAAAGTACCGCCCGAGCCTGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAGTTGTTATCCGGTTATCAAGCCAAAGCGCCGTAGCT > NC_000913_3_vch_pgi/4344671‑4344963 | attcctcgctcgctttcattgccgccagctacggcgctttggcttgataaccggataacaacttgcgctttgttgatgccggatgcggcgtgaattccttatccggtctacaaaatttgcaaatccaaagcattacattaagacgTGGc > 1:317616‑M1/146‑149 (MQ=255) tcctcgctcgctttcattgccgccagctacggcgctttggcttgataaccggataacaacttgcgctttgttgatgccggatgcggcgtgaattccttatccgctctacaaaatttgcaaattaaaagcattacattaaaacgTGGCCt < 1:183131‑M1/6‑1 (MQ=255) tcgctcgctttcattgccgccagctacggcgctttggcttgataaccggataacaacttgcgctttgttgatgccggaagcggcgtgaattccttagccggtctacaaaatttgcaaatccaaagcattacattaagacgTGGCCTGAt < 1:360682‑M1/9‑1 (MQ=255) tttcattgccgccagctacggcgctttggcttgataaccggataacaacttgcgctttgttgatgccggatgcggcgtgaattccttatccggtctacaaaatttgcaaatccaaagcattacattaagacgTGGCCTGATGCGATATg < 2:286945‑M1/17‑1 (MQ=255) acGCTGCGCAGGATCCAGATCCATCTGCTGGATAAATATCGCAAAGTACCGCCCGAGCCTGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGACTGATGCGATATGtt > 1:289959/1‑149 (MQ=255) cgcAGGATCCAGATCCATCTGCTGGATAAATATCGCAAAGTACCGCCCGGGCCTGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAg < 2:1275/149‑1 (MQ=255) cgccagctacggcgctttggcttgataaccggataacaacttgcgctttgttgatgccggatgcggcgtgaattccttatccggtctacaaaatttgcaaatccaaagcattacattaagacgTGGCCTGATGCGATATGTTTATCAgg > 1:286945‑M1/124‑149 (MQ=255) cAGGATCCAGATCCATCTGCTGGATAAATATCGCAAAGTACCGCCCGAGCCTGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGc < 1:270266/149‑1 (MQ=255) tgGATAAATATCGCAAAGTACCGCCCGAGCCTGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCtt > 1:287120/1‑149 (MQ=255) tatCGCAAAGTACCGCCCGAGCCTGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTg < 2:287120/149‑1 (MQ=255) gTACCGCGCGAGCCTGTTCATGTTGATAGTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGCCAATAGCTAACGATAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTg < 2:111506/149‑1 (MQ=255) cTGTTCATGCTGATATTCCGGTCGGTGCAGTGCGTGCTGTGAAAGCCTCACGTGGCCAATTGCTAACGAACATGGCCTGATGCGATATGTTCATCAGGCCACGTCTTACTGTACTGCTTTGGATTTCCAAATTTTTTCGACCggcgccg > 2:1859/1‑144 (MQ=255) gATATTCCGGTCGGGTCAGTGAGTGATTTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTGTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCAcgcc < 2:304021/149‑1 (MQ=255) ccGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCAcgcc > 1:128812/1‑143 (MQ=255) ccGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCAcgcc < 2:128812/143‑1 (MQ=255) cggtcggtGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTtaa > 2:237151/1‑91 (MQ=255) cggtcggtGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTtaa < 1:237151/91‑1 (MQ=255) gAACGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCACgttgt > 2:7625/1‑149 (MQ=255) aaatccaaagcattacattaagacgTGGCCTGATGCGATATGTTTATCAg < 1:54524‑M1/25‑1 (MQ=255) aaatccaaagcattacattaagacgTGGCCTGATGCGATATGTTTATCAg > 2:54524‑M1/26‑50 (MQ=255) aGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTCGGGGTTGCAAATTTTGTAGACCGGCTAAGGAATTGCCGCCGCATCCGGCATCAACAAAGCGCAAGTTCTTATCCGGTTATCAAGCCaaa > 2:296390/1‑149 (MQ=255) aTGGCCTTATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAGTTGTTATCCGGTTATCAAGCCAAAGCGCCGTAGCt < 1:320161/149‑1 (MQ=255) | CGCCTCAATGGTGACACGCTGCGCAGGATCCAGATCCATCTGCTGGATAAATATCGCAAAGTACCGCCCGAGCCTGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAGTTGTTATCCGGTTATCAAGCCAAAGCGCCGTAGCT > NC_000913_3_vch_pgi/4344671‑4344963 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |