| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913_3_vch_pgi | 2,393,422 | Δ13 bp | coding (1613‑1625/1842 nt) | nuoL ← | NADH:ubiquinone oxidoreductase, membrane subunit L |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913_3_vch_pgi | 2393422 | 2393434 | 13 | 15 [0] | [0] 15 | nuoL | NADH:ubiquinone oxidoreductase, membrane subunit L |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | = 2393421 | 0 (0.000) | 15 (0.680) | 15/282 | 0.5 | 100% | coding (1626/1842 nt) | nuoL | NADH:ubiquinone oxidoreductase, membrane subunit L |
| ? | NC_000913_3_vch_pgi | 2393435 = | 0 (0.000) | coding (1612/1842 nt) | nuoL | NADH:ubiquinone oxidoreductase, membrane subunit L | |||||
AACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGGTAATTTCCAGGGT > NC_000913_3_vch_pgi/2393293‑2393573 | gccgttcgcacttaacagcagacctttacctgcaaagcgggaaaggaaaggcgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTTTa < 2:67842‑M2/7‑1 (MQ=255) ccgttctcacttgacagcagacctttacctgcaaagcgggaaaggccagccgggctgttcatcattgagttcagcggatcgcgtttcagcacccgggcaatatccaggaacggcttgacgaacactttgtgttacagccacCGTTTTac > 2:288013‑M2/142‑149 (MQ=255) aaagcgggaaaggacagccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACt < 1:174512‑M2/40‑1 (MQ=255) agcgggaaaggacagccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGt > 2:57966‑M2/108‑149 (MQ=255) gccgggatgttcatcattgagttcagcggatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTc < 2:51130‑M2/56‑1 (MQ=255) agcggatcgcgtttcagcaaccaggcactacccaggaacggcttgacgaacactttgtcctacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTGGGCGATGGAGGCCACCAGAGTACGGTTACCcagccac > 2:366414‑M2/70‑149 (MQ=255) gatcgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTATTGGCGATGGAGGTCACCAGAGTACGGTTACCccgccccagcc > 2:136776‑M2/66‑149 (MQ=255) cgcgtttcagcaaccaggcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAgg < 1:57966‑M2/87‑1 (MQ=255) gcaatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGGACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCg > 2:143175‑M2/46‑149 (MQ=255) aatacccaggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGac < 2:230334‑M2/106‑1 (MQ=255) caggaacggcttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGACACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACcgc > 1:383584‑M2/38‑149 (MQ=255) cttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGcc < 1:85555‑M2/31‑1 (MQ=255) cttgacgaacactttgtcatacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGcc > 2:85555‑M2/29‑59 (MQ=255) tgtcttacggccagCGGTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGTTGTCAGTAGTATGGCGACCACCGCGACCACGCCAGAGGTAATTTCCa < 2:28445‑M2/135‑1 (MQ=255) atacagccagCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGGTAATTTCCAGGGt > 1:174646‑M2/11‑149 (MQ=255) | AACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCAGTCAAATCCCCAGGCGTTGTACCACCAGGTGCCCAGCAGACGGCCCGGCGCACTGTTGGCGATGGAGGTCACCAGAGTACGTTTACCCAGCCACAGCCAGGCTGCCAGCAGAATGCCGACCACCGCGACCACGCCAGAGGTAATTTCCAGGGT > NC_000913_3_vch_pgi/2393293‑2393573 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |