| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_pgi | 306122 = | 22 (1.000) | 3 (0.150) | 3/266 | 2.8 | 13.6% | coding (696/1644 nt) | ecpD | polymerized tip adhesin of ECP fibers |
| ? | NC_000913_3_vch_pgi | 306162 = | 18 (0.890) | coding (656/1644 nt) | ecpD | polymerized tip adhesin of ECP fibers | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGGGTATAGTTAACCATCTTACAACTTAATCCTGAACGGCTGCCGATGGTTTGCGTCCGGCAGTCGGCGTTCCCTTCGCCCAGAGTCGGTACTCCGTCGCTGTTGATAAATACTTCCGCCAGCGAGTGGGTATTTATCAACCGTAGATTTGCTGCTTTCGTATGGGTGACGTTGCGAACATACCAGTTGCCGGAGGCCTGATCCTTACAGCGTGCGCCGCTGCTGGCGTCATAGTTCACAGAGGTCTGGCAGGCATTGATGGTCATTGTAAAGCTGCTGCCGACGGGCA > NC_000913_3_vch_pgi/306021‑306309 | aGGGTATAGTTAACCATCTTACAACTTAATCCTGAACGGCTGCCGATGGTTTGCGTCCGGCAGTCGGCGTTCCCTTCGCCCAGAGTCGGTACTCCGTCGCTGTTGATAAATACTTCCGCCAGCGAGTGGGTATTTATCAACCGTAGAtt > 2:372683/1‑149 (MQ=255) tataCTTAACCATCTTACAACTACATCCTGAACGGCTGCCGATGGTTTGCGTCCGGCAGTCGGCGTTCCCTTCGCCCAGAGTCGGTAATCCGTCGCTGTTGATAAATACTTCCGCCAGCGAGTGAGTATTTATCAACCGTAGATTtgct < 1:328086/149‑1 (MQ=255) cATCTTACAACTTAATCCTGAACGGCTGCCGATGGTTTGCGTCCGGCAGTCGGCGTTCCCTTCGCCCAGAGTCGGTACTCCGTCGCTGTTGATAAATACTTCCGCCCGCGAGTGGGTATTTATCAACCGTAGATTTCCTGCTTTCGTAt > 2:93041/1‑149 (MQ=255) cATCTTACAACTTAATCCTGAACGGCTGCCGATGGTTTGCGTCCGGCAGTCGGCGTTCCCTTCGCCCAGAGTCGGTACTCCGTCGCTGTTGATAAATACTTCCGCCAGCGAGTGGGTATTTATCAACCGTAGATTTGCTGCTTTCGTAt > 1:224349/1‑149 (MQ=255) ttACAACTTAATCCTGAACGGCTGCCGATGGTTTGCGTCCGGCAGTCGGCGTTCCCTTCGCCCAGAGTCGGTACTCCGTCGCTGTTGATAAATACTTCCGCCAGCGAGTGGGGATTTATCAACCGTAGGTTGGCTGCTTTCGTATggct > 2:38635/1‑147 (MQ=255) aaCTTAATCCTGAACGGCTGCCGATGGTTTGCGTCCGGCAGTCGGCGTTCCCTTCGCCCAGAGTCGGTACTCCGTCGCTGTTGATAAATACTTCCGCCAGCGAGTGGGTATTTATTAACCGTAGATTTGCTGCTTTCGTTTGGGTGTCg > 2:205358/1‑149 (MQ=255) aagggCTGCCGATGGTTTGCGTCCGGCAGTCGGCGTTCCGTGCGCCCAGAGTCGGTACTCCGTCGCTGTTGATAAATACTTCCGCCAGCGAGTGGGTATTTATCAACCGTAGATTTGCTGCTTTCGTATGGGTGACGTTGCGAACATAc < 2:315321/146‑1 (MQ=255) cGGCTGCCGATGGTGTGAGTCCGGCAGTCGGCGTTCCCTTCGCCCAGAGTCGGTACTCCGTCGCTGTTGATAAATACTATCGTCAAGGAGTGGGTATTTATCAACCGTAGATTTGCTGCTTTCGTATGGGTGACGTTGCGAACATACCa < 1:170634/149‑1 (MQ=255) ccGATGGTTTGCGTCCGGCAGTCGGCGTTCCCTTCGCCCAGAGTCGGTACTCCGTCGCTGTTGATAAATACTTCCGCCAGCGAGTGGGTATTTATCAACCGTAGATTTGCTGCTTTCGTATGGGTGCCGTTGCGAACATACCAGTTGcc > 2:115527/1‑149 (MQ=255) gATGGTTTGCGTCCGGCAGTCGGCGTTCCCTTCGCCCAGAGTCGGTACTCCGTCGCTGTTGATAAATACTTCCGCCAGCGAGTGGGTATTTATCAACCGTAGATTTGCTGCTTTCGTATGGGTGACGTTGCGAACATAACAGTTGccag > 1:96619/1‑147 (MQ=255) gTCCGGGAGTGGGCGTTCCCTTCGCCCAGGGTCGGTACTCCGTCGCTGTTGATAAATACTTCCGCCAGCGAGTGGGTATTTATCAACCGTAGATTTGCTGCTTTCGTATGGGTGACGTTGCGAACATACCAGTTGCCGGAGGCCTGATc < 2:337146/149‑1 (MQ=255) gTCCGGCAGTCGGCGTTCCCTTCGCCCAGAGTCGGTACTCCGTCGCTGTTGATAAATACTTCCGCCAGCGAGTGGGTATTTATCAACCGTAGATTTGCTGCTTTCGTATGGATGACGGTGCGCACATACCAGTTGCCCGAGGCCTGATc > 1:332543/1‑149 (MQ=255) cGGCAGTCGGCGTTCCCTTCGCCCAGAGTCGATACTCCGTCGCTGTTGCTAAATACTTCCGCCAGCGAGTGGGTATTTATCAACCGTAGCTTTGCTGGTTCCCTATGGTTGTGGTTGCGAACATACCAGTTCCCCGAGGCCTCATCCta > 2:275410/1‑148 (MQ=255) cAGTCGGCGTTCCCTTCGCCCAAAGTCGATACACCGTCGCTGTTGTTAAATACTTCCGCCAGCGAGTGGGTATTTATCAACCGTAGATTTGCTGCTTTCGTATGGGTGACGTTGCGAACATACCAGTCGCCGGAGGCCTGATCCttcaa > 1:307311/1‑146 (MQ=255) cccTTCGCCCAGAGTCGGTACTCCGTCGCTGTTGATAAATACTTCCGCCAGCGAGTGGGTATTTATCAACCGTAGATTTGCTGCTTTCGTATGGGTGACGTTGCGAACATACCAGTTGCCGGAGGCCTGATCCTTACAGCGTGcgccgc < 1:78476/149‑1 (MQ=255) ggTCCTCCGTCGCTGTTGATAGATACTTCCGCCAGCGAGTGGGTATTTATCAACCGTAGATTTGCTGCTTTCGTATGGGTGACGTTGCGAACATACCAGTTGCCGGAGGCCTGATCCTTACAGCGTGCGCCGCTGCTGGCGTCATAGtt < 2:247773/149‑1 (MQ=255) ctgctgcGCTGTTGATAACTACTTCCGCCAGCGAGTGTGTATTTATCAACCGTAGATTTGCCGCTGTCGTATGGGTGACGTTGCGAACATACCAGTTGGCGGAGGCCTGATCCTTACAGCGTGCGCCGCTGCTGGCGTCATAGTTcaca < 2:55763/143‑1 (MQ=255) cTCCGGCGCTGTCGATAAATACTTCCGCCAGCGAGTGGGTATTTATCAACCGTAGATTTGCTGCTTTCGTATGGGTGACGTTGCGAACATACCAGTTGCCGGAGGCCTGATCCTTACAGCGTGCGCCGCTGCTGGCGTCATAGTTcaca < 2:268832/149‑1 (MQ=255) ttgataaatacccactcgctggcggaagtatttatcaacCGTAGATTTGCTGCTTTCGTATGGGTGACGTTGCGAACATACCAGTTGCCGGAGGCCTGATCCTTACAGCGTGCGCCGCTGCTGGCGTCATAGTTCACAGAGGTCTggca > 1:145856‑M2/40‑149 (MQ=255) aatacccactcgctggcggaagtatttatcaacCGTAGATTTGCTGCTTTCGTATGGGTGACGTTGCGAACATACCAGTTGCCGGAGGCCTGATCCTTa > 2:148506‑M2/34‑99 (MQ=255) aatacccactcgctggcggaagtatttatcaacCGTAGATTTGCTGCTTTCGTATGGGTGACGTTGCGAACATACCAGTTGCCGGAGGCCTGATCCTTa < 1:148506‑M2/66‑1 (MQ=255) tatttatcaacCGTAGATTTGCTGCTTTCGTATGGGTGACGTTGCGAACATACCAGTTGCCGGAGGCCTGATCCTTACAGCGTGCGCCGCTGCTGGCGTCATAGTTCACAGAGGTCTGGCAGGCATTGATGGTCATTGTAAAGctgctg < 2:196436‑M2/138‑1 (MQ=255) tatttatcaacCGTAGATTTGCTGCTTTCGTATGGGTGACGTTGCGAACATACCAGTTGCCGGAGGCCTGATCCTTACAGCGTGCGCCGCTGCTGGCGTCATAGTTCACAGAGGTCTGGCAGGCATTGATGGTCATTGTAAAGctgctg > 1:233462‑M2/12‑149 (MQ=255) tttatcaacCGTAGATTTGCTGCTTTCGTATGGGTGACGTTGCGAACATACCAGTTGCCGGAGGCCTGATCCTTACAGCGTGCGCCGCTGCTGGCGTCACAGCTAACGGAGGTCTGGCAGGCATTGATGGTCATTGTAAAGCTGCTGcc > 1:168896‑M2/10‑149 (MQ=255) cCGTAGATTTGCTGCTTTCGTATGGGTGACGTTGCGAACATACCAGTTGCCGGAGGCCTGATCCTTACAGCGTGCGCCGCTGCTGGCGTCATAGTTCACAGAGGTCTGGCAGGCATTGATGGTCATTGTAAAGCTGCTGCCGACGGGCa > 1:289767‑M2/2‑149 (MQ=255) | AGGGTATAGTTAACCATCTTACAACTTAATCCTGAACGGCTGCCGATGGTTTGCGTCCGGCAGTCGGCGTTCCCTTCGCCCAGAGTCGGTACTCCGTCGCTGTTGATAAATACTTCCGCCAGCGAGTGGGTATTTATCAACCGTAGATTTGCTGCTTTCGTATGGGTGACGTTGCGAACATACCAGTTGCCGGAGGCCTGATCCTTACAGCGTGCGCCGCTGCTGGCGTCATAGTTCACAGAGGTCTGGCAGGCATTGATGGTCATTGTAAAGCTGCTGCCGACGGGCA > NC_000913_3_vch_pgi/306021‑306309 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |