New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_pgi	1207790 =	17 (0.770)	5 (0.260)	5/258	2.0	21.2%	coding (290/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913_3_vch_pgi	1209619 =	22 (1.130)					pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

TTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATG  >  NC_000913_3_vch_pgi/1209475‑1209764                                                                                                                                                 |                                                                                                                                                  ttGTCGCACAAGCCTTTGCCAGTTCCGGCTATTCTTTAGCAGAAAAAGCGGCCCCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACACGTAATGCAGAGCCTTCTCCCAAACCAACGttt                                                                                                                                               <  2:218347/149‑1 (MQ=255) tgggctgATAACCCTGTGCCAGTTGCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGttt                                                                                                                                               <  2:211981/143‑1 (MQ=255)                cggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGaaa                                                                                                                                <  1:190144‑M2/20‑1 (MQ=255)                   ccAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATaa                                                                                                                             >  2:36684/1‑149 (MQ=255)                    cAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAAc                                                                                                                            <  1:338552/149‑1 (MQ=255)                     aGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGCAAATGAAGAAATAACa                                                                                                                           <  1:339197/149‑1 (MQ=255)                       ttCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACGCCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAg                                                                                                                         >  1:212307/1‑149 (MQ=255)                                   ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGCTTATGAAAATGAAGAAATAACAAGCAAATGGcatca                                                                                                             >  2:154663/1‑149 (MQ=255)                                              aaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtttt                                                                                                  >  1:212247/1‑149 (MQ=255)                                                  ggCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCATCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCa                                                                                              <  1:90397/149‑1 (MQ=255)                                                  ggCACCATTGCATGTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCa                                                                                              <  1:289810/149‑1 (MQ=255)                                                     aCCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg                                                                                           >  1:94748/1‑149 (MQ=255)                                                     aCCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAACGGCATCCTTCCTGCTTTTACCAggg                                                                                           >  2:74262/1‑149 (MQ=255)                                                     aCCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGAAACTGGCATCATTCCTGCTTTTACCAggg                                                                                           >  2:74228/1‑149 (MQ=255)                                                     aCCATTGCATTTCAGCCAGCCTATTGGCTGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAACAAATAACAAGCAAATGTCATCATTCCTGCTTTTACCatcg                                                                                           <  2:251554/149‑4 (MQ=255)                                                                  ataaccggtagagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGc                                                                              <  2:223904‑M2/70‑1 (MQ=255)                                                                         gtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg                                                                       <  2:218488‑M2/77‑1 (MQ=255)                                                                         cTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg                                                                       <  1:51507/149‑1 (MQ=255)                                                                                 atgaaaccggtgcgtccgaatgtagtcgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAc                                                               <  2:13956‑M2/85‑1 (MQ=255)                                                                                                 ctaatgtagtcgttgctgcattgagttttgctccttctcccaaaccaaCGGTTATGAAAATGAAGAAATAACAAGCACATGGCATCAATCCTGCTCTTACGAGGGGGAATTTACTTGCTTATTGCATATATACGCATATCAACAAAtgc                                               >  2:56657‑M2/49‑148 (MQ=255)                                                                                                  cGGAACCGGGACACCAACAGGTAATGCAGAGCCTTTTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCACTCCTGCTTTTACCCGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc                                              <  1:175438/149‑1 (MQ=255)                                                                                                        cGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAac                                        >  2:242513/1‑149 (MQ=255)                                                                                                                 aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTa                               >  1:44868/1‑149 (MQ=255)                                                                                                                     ggTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAAc                           <  1:36684/149‑1 (MQ=255)                                                                                                                      ggaaTGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACaa                            <  2:310522/145‑1 (MQ=255)                                                                                                                      gTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACaa                            >  1:310522/1‑147 (MQ=255)                                                                                                                             agagCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCGTTCCTGCTTTTACCAGGGGGATTTAACATGATAATTGGCTCTGTACGGGAATAAACAAATGACCAGAACACAAGTCTGCACCATAATacg                   >  1:174732/1‑149 (MQ=255)                                                                                                                                         caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCa       >  1:342877‑M2/9‑149 (MQ=255)                                                                                                                                             ccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATCCGATGAACTGTGCAGGAt   >  2:119569‑M2/5‑149 (MQ=255)                                                                                                                                              caaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACTAGTGGGAGTTAACATGGTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAAGGCGCCGAACTCTCCAggacg  >  2:160899‑M2/4‑147 (MQ=255)                                                                                                                                                 |                                                                                                                                                  TTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATG  >  NC_000913_3_vch_pgi/1209475‑1209764

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.