New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA 1207790 =14 (0.210)52 (0.870) 44/248 0.4 80.4% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913_3_hsa_tpiA 1209619 = 13 (0.220)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

Only 100 of 136 total aligned reads displayed.

TTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGG  >  NC_000913_3_hsa_tpiA/1207641‑1207938
                                                                                                                                                     |                                                                                                                                                    
ttGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGCATCCGTTTGGCGCTATCAAATGGAATGGCACTGTGCAAACGGCTCTCGCAAACCT                                                                                                                                                      >  2:780407‑M1/1‑150 (MQ=255)
tcgcatcctgcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgt                                                                                                                                                      >  1:195818‑M1/150‑150 (MQ=255)
 tGCAGCGGGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGATACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTT                                                                                                                                                     <  2:409388‑M1/150‑1 (MQ=255)
 ggcAGCGTGGGGGAGGCATCCGGGGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTT                                                                                                                                                     <  1:296318‑M1/149‑1 (MQ=255)
       gtggtgGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGTACTGTGCAAACAGTGCTCGAAAACCTTGGTTTG                                                                                                                                               <  2:995188‑M1/150‑1 (MQ=255)
       gtggtgGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTG                                                                                                                                               <  2:608785‑M1/150‑1 (MQ=255)
       ctgcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTg                                                                                                                                               <  1:1120058‑M1/8‑1 (MQ=255)
        tgcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg                                                                                                                                              >  1:355522‑M1/142‑150 (MQ=255)
        tgcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg                                                                                                                                              <  2:802978‑M1/9‑1 (MQ=255)
        gggtggaGGCATCCGGTGCCAGGCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCTCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGG                                                                                                                                              <  2:541961‑M1/149‑1 (MQ=255)
        ctgcacagttcagcgcattacgttgtagatctgtgttctgtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg                                                                                                                                              >  1:1146130‑M1/142‑150 (MQ=255)
         gtacagttcagcgcattacgttgtagatcttttttttggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTggg                                                                                                                                             >  2:1131118‑M1/141‑150 (MQ=255)
         gcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTggg                                                                                                                                             >  1:366218‑M1/141‑150 (MQ=255)
           acagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgag                                                                                                                                           <  2:313277‑M1/12‑1 (MQ=255)
             gAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA                                                                                                                                         <  2:806358‑M1/150‑1 (MQ=255)
             gAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTT                                                                                                                                                     >  1:640665‑M1/1‑138 (MQ=255)
             gAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTT                                                                                                                                                     <  2:640665‑M1/138‑1 (MQ=255)
                tcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGa                                                                                                                                      >  2:477284‑M1/134‑150 (MQ=255)
                gCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCCGATAGGTCGTCACTGTGCACAGGGCCCTTGAAAACCTTGGTTTGGGAGAAGGa                                                                                                                                      >  1:566952/1‑150 (MQ=17)
                gCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGa                                                                                                                                      >  1:476326/1‑150 (MQ=255)
                gCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGa                                                                                                                                      >  1:476338/1‑150 (MQ=255)
                gCACCCGGTGCCAGCCTGGAGAAGGGTCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAACCGCAAGAAACCGTTTTTCTTGATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGa                                                                                                                                      <  1:1163497/150‑1 (MQ=18)
                  tgccggTGCTCGCGGGGAAACGGCGCGGCACTACCAGTTACTTGCCGCACTTCGCGCGCTGCTGTGAAGCCGCAAGAATCCGCTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTTGTTTGGGAGAAGGctc                                                                                                                                    <  2:543642‑M1/148‑4 (MQ=255)
                  agcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGc                                                                                                                                    >  2:1120058‑M1/132‑150 (MQ=255)
                  aTCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGCGAAGGctc                                                                                                                                    >  2:1006812‑M1/1‑147 (MQ=255)
                   tCCGGTGCCAGCCTGGACAAGGGGCGGCACGACCAGTTACTTACAGCACTTCGCGCGCTGCTGTTAAGCCGCGAGAATCAGTTTGCGGATATCAAATCGCATGGCACTGTTCAACCAGTTATCGAAATCCTTGGTTTGGGCGAAggctct                                                                                                                                   >  2:670150/1‑146 (MQ=255)
                     cGGGGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgc                                                                                                                                 <  1:654948‑M1/150‑7 (MQ=255)
                         tacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTc                                                                                                                             <  2:120873‑M1/26‑1 (MQ=255)
                           cAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAACCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCac                                                                                                                           <  1:50586/150‑2 (MQ=255)
                              tgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgc                                                                                                                        >  1:1024075‑M1/120‑150 (MQ=255)
                              ccTGGAGAAGGGGCGGCCCGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgt                                                                                                                        <  2:301893‑M1/150‑16 (MQ=255)
                                tGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttg                                                                                                                      >  1:317801‑M1/1‑133 (MQ=255)
                                gggaGAAGGGGCGCCACGACCAGTTACTTACCGCACTTTCCCCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGCTATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattaccttttg                                                                                                                      <  2:1098472‑M1/149‑18 (MQ=255)
                                  gatctgtgttctggtcatttgttgataagcgtacatagccaataagcatgttaaatccctctggtaaaagcaggaatgatgccatttgcttgttgtttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagca                                                                                                                    <  2:638300‑M1/35‑1 (MQ=255)
                                  gagaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggt                                                                                                                    <  1:545871‑M1/150‑20 (MQ=255)
                                   agaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgc                                                                                                                                 <  1:1151030‑M1/136‑7 (MQ=255)
                                   agaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgc                                                                                                                                 >  2:1151030‑M1/1‑130 (MQ=255)
                                    tctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgatatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCCATGCCGcaag                                                                                                                  <  1:81112‑M1/37‑2 (MQ=255)
                                       tgtttctggtcatgtgtttctacgcgtacatagccaataagcatgttaaatctccctggtaaaagcaggaatgatgccatttgcttggtatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc                                                                                                               >  1:808756‑M1/111‑150 (MQ=255)
                                       gtgttctggtcatttgttgatacgcgtacatagccaataagcatgataaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc                                                                                                               <  1:937369‑M1/40‑1 (MQ=255)
                                       ggggCGGCACGACCAGGTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAACCCGTTTGGCGATATCAAATCGGATGGCACTGTCCAAACGGCCCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtccc                                                                                                               <  2:299143‑M1/150‑25 (MQ=255)
                                           tctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa                                                                                                           <  2:961951‑M1/44‑1 (MQ=255)
                                              cACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTa                                                                                                        <  2:476326/150‑1 (MQ=255)
                                              cACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTa                                                                                                        <  2:476338/150‑1 (MQ=255)
                                               aCGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgt                                                                                                       <  2:830942‑M1/150‑33 (MQ=255)
                                               aCGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgt                                                                                                       >  1:1008773‑M1/1‑118 (MQ=255)
                                                   tttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTCGGTTTGGGGGAAGGAGCAAAACTCAATGAACCAACGGCTACATTAGGACg                                                                                                   <  2:981242‑M1/52‑1 (MQ=255)
                                                   ccAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggcc                                                                                                   <  2:771480‑M1/150‑37 (MQ=255)
                                                    cAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggcct                                                                                                  >  2:637837‑M1/1‑113 (MQ=255)
                                                    cAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggcct                                                                                                  <  2:317801‑M1/150‑38 (MQ=255)
                                                          atacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGt                                                                                            <  1:1043698‑M1/59‑1 (MQ=255)
                                                            acgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt                                                                                          >  2:663958‑M1/90‑150 (MQ=255)
                                                            acgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt                                                                                          >  2:663950‑M1/90‑150 (MQ=255)
                                                              ccgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCa                                                                                        >  1:1100130‑M1/88‑150 (MQ=255)
                                                                gtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa                                                                                      >  2:881600‑M1/86‑150 (MQ=255)
                                                                gCACTTCGCGCGCTGCTGTTAAGCCGGAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa                                                                                      <  1:965025/150‑1 (MQ=255)
                                                                 cACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgc                                                                                     <  2:398313‑M1/150‑51 (MQ=255)
                                                                        ccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATAcc                                                                              <  2:546554‑M1/73‑1 (MQ=255)
                                                                         caagaagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCg                                                                             >  2:73804‑M1/77‑150 (MQ=255)
                                                                         aataaagcatgttaaatccccctggtaaaagcaggaaggatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGATCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCg                                                                             >  2:464739‑M1/77‑150 (MQ=255)
                                                                           gctgctGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACGTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctg                                                                           >  1:305338‑M1/1‑90 (MQ=255)
                                                                             aagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTa                                                                         >  1:945902‑M1/73‑150 (MQ=255)
                                                                               ctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttg                                                                                                                      >  1:916698‑M1/1‑86 (MQ=255)
                                                                               ctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttg                                                                                                                      <  2:916698‑M1/103‑18 (MQ=255)
                                                                                catgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTCTGa                                                                      <  2:148149‑M1/81‑1 (MQ=255)
                                                                                  ttAAGCCGGAAGAATCCGTGTGTCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAtt                                                                    <  2:449799/150‑1 (MQ=255)
                                                                                  ttAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaa                                                                    <  2:609426‑M1/150‑68 (MQ=255)
                                                                                           aaGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggt                                                           <  2:765882‑M1/150‑77 (MQ=255)
                                                                                              aagccgttTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgcc                                                        <  2:168695‑M1/147‑80 (MQ=255)
                                                                                                tCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgc                                                      >  1:575292‑M1/1‑69 (MQ=255)
                                                                                                  cGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAAt                                                    <  1:181241/150‑1 (MQ=255)
                                                                                                   gTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtgaccttcagccactccgccaacaggctggctgaaatgcaatggtgccgcttt                                                   <  1:971681‑M1/150‑85 (MQ=255)
                                                                                                    aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCa                                                  >  1:1035178‑M1/50‑150 (MQ=255)
                                                                                                        caggaatgatgccatttgctttgtatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTaa                                              >  2:765006‑M1/46‑150 (MQ=255)
                                                                                                         cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgc                                             <  1:765689‑M1/150‑91 (MQ=255)
                                                                                                          gATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccgg                                                                                                             <  2:1109208‑M1/85‑27 (MQ=255)
                                                                                                           gaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCa                                           >  1:631025‑M1/43‑150 (MQ=255)
                                                                                                           gaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCa                                           >  1:961951‑M1/43‑150 (MQ=255)
                                                                                                            aatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggt                                                                 <  2:826616‑M1/86‑1 (MQ=255)
                                                                                                            aatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggt                                                                 >  1:826616‑M1/42‑127 (MQ=255)
                                                                                                             ctcAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaa                                         <  1:529735‑M1/149‑95 (MQ=255)
                                                                                                                aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaactgcaatggtgccgctttttctgctgattaa                                      >  2:33615‑M1/1‑53 (MQ=255)
                                                                                                                aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAg                                      >  1:375327/1‑150 (MQ=255)
                                                                                                                   tCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatac                                   <  2:1008773‑M1/150‑101 (MQ=255)
                                                                                                                   ccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTgg                                   <  2:251749‑M1/116‑1 (MQ=255)
                                                                                                                          cttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAAt                                             <  1:1114794‑M1/106‑1 (MQ=255)
                                                                                                                           ttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACAGGTTGTATAGGGATAGCGTTTATGGTTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGaa                           <  2:1015546‑M1/124‑1 (MQ=255)
                                                                                                                            aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGGATTGAGCAATCAGTCATCATTCAGTGGTGGTGGAAt                          >  2:962134/1‑150 (MQ=255)
                                                                                                                                tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaa                      >  1:615536‑M1/1‑37 (MQ=255)
                                                                                                                                 tttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCCGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCCGTGGGGGTGGAATGCCGc                     <  1:635702‑M1/130‑1 (MQ=255)
                                                                                                                                   aaaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaagg                   <  1:456791‑M1/150‑117 (MQ=255)
                                                                                                                                   aaaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaagg                   >  2:456791‑M1/1‑34 (MQ=255)
                                                                                                                                    cttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGGCGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaaa                  <  1:1126213‑M1/133‑1 (MQ=255)
                                                                                                                                     ttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAtt                                                                                                         <  2:953751‑M1/46‑1 (MQ=255)
                                                                                                                                     ttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaaaa                 <  1:705068‑M1/134‑1 (MQ=255)
                                                                                                                                            tcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgc                                                                 <  2:822124‑M1/95‑71 (MQ=255)
                                                                                                                                            tcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgc                                                                 >  1:822124‑M1/1‑25 (MQ=255)
                                                                                                                                                 aaCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaat     >  2:879193‑M1/1‑20 (MQ=255)
                                                                                                                                                  acgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGt                               >  1:1001810‑M1/4‑123 (MQ=255)
                                                                                                                                                    cTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaaaaaa  >  2:706740‑M1/1‑17 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
TTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGG  >  NC_000913_3_hsa_tpiA/1207641‑1207938

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.