New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 228744	41 (0.680)	11 (0.190)	9/270	6.0	21.9%	intergenic (+82/‑12)	rrlH/rrfH	23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon
	?	NC_000913_3_hsa_tpiA	2726224 =	NA (NA)					intergenic (‑36/+57)	rrfG/rrlG	5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon
Rejected: Coverage evenness skew score above cutoff.

TAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCA‑GAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGCAGTAAGC  >  NC_000913_3_hsa_tpiA/228607‑228892                                                                                                                                           |                                                                                                                                                     tAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCA‑GAAGCGGTCTGATAAAACAGAAtt                                                                                                                                           >  2:932084/1‑149 (MQ=32)    gcgcAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCGGTTTTGGCGGATTGAGAGAAGATTTTCAGACTGATCAAGATAAAACCAGAACGCA‑GACGCGGTCTGATAAAACAGAATTTGc                                                                                                                                        >  2:909121/1‑149 (MQ=11)    gcgcAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAAAGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCA‑GAAGCGGTCTGATAAAACAGAATTTGc                                                                                                                                        >  1:135917/1‑149 (MQ=17)                    aGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCA‑GAAGCCGTCGGATAAAACAGAATTTGCCTGGCGGCCGTAgcgc                                                                                                                        >  1:732725/1‑149 (MQ=21)                      cTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCA‑GAAGCGGTCTGATAAAACAGCATTTGCCTAGCGCGCGTCgcgccg                                                                                                                      >  2:51872/1‑147 (MQ=11)                      cTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCA‑GAAGCGGTCTGATAAAACAGAATTTGACTGGCCGCCGTGAcgcgt                                                                                                                      >  1:493141/1‑148 (MQ=255)                       tAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGGA‑GAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCGGTAGCGCggt                                                                                                                     >  2:75002/1‑149 (MQ=17)                        acccGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCA‑GAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCggtg                                                                                                                    <  1:219798/147‑1 (MQ=21)                           cGGTATTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCA‑GAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTc                                                                                                                 <  1:964406/149‑1 (MQ=21)                            ggTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCA‑GAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTcc                                                                                                                <  2:141365/149‑1 (MQ=34)                                 tAATGAACCGTGAGTCCTCACCTTACAACGCGGAAGCTGTTTTGGCGGATTTAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCA‑GAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGTCGTAGCGCGGTGGTCCCACCt                                                                                                           <  2:680568/149‑1 (MQ=11)                                 tAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCA‑GAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCt                                                                                                           >  1:379629/1‑149 (MQ=34)                                  aaTGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAGGATTTTGAGACTGATGCAGTTTATATCAGAAAGGACTGCGTGCGCTG‑TAAAAGATAACTTGCCTGGCGGCCGTAGCGCGGTGGTCTCACTTg                                                                                                          >  2:760187/1‑149 (MQ=2)                                   aTGAACCGTGAGGCGTGACCTTACAACGCCGAAGCTGTTTTGGCGAATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCA‑GAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACATGa                                                                                                         >  2:958298/1‑149 (MQ=255)                                      aaCCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCA‑GAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGAccc                                                                                                      >  2:459645/1‑149 (MQ=34)                                       aCCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCA‑GAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGAcccc                                                                                                     <  1:936367/149‑1 (MQ=34)                                           tGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCA‑GAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGc                                                                                                 <  2:345507/149‑1 (MQ=34)                                               ggttAAGCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGGGGGGGTTTTGAGCCTGATGCAGATTAAATCAGAACGCA‑GAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGaa                                                                                             <  2:1018652/147‑1 (MQ=11)                                                cTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCA‑GAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGCGGTCCCACCTGACCCCATGCCGAAc                                                                                            >  1:825236/1‑149 (MQ=21)                                                 ttAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCA‑GAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGACCt                                                                                           >  1:267582/1‑149 (MQ=21)                                                      cTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGCTTTTCAGCCTGATACAGATTAAATCAGAACGCA‑GAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                                                                                      <  1:338979/149‑1 (MQ=21)                                                      cTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCA‑GAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                                                                                      <  2:714413/149‑1 (MQ=34)                                                      cTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCA‑GAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                                                                                      >  2:379378/1‑149 (MQ=34)                                                       ttACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCA‑GAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAg                                                                                     <  1:451930/149‑1 (MQ=34)                                                         aCAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCA‑GAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTg                                                                                   >  2:796037/1‑149 (MQ=34)                                                           aaCGGCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCA‑GAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGaa                                                                                 <  1:71239/149‑1 (MQ=21)                                                                   aGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCA‑GAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTa                                                                         <  1:869925/149‑1 (MQ=34)                                                                     tgtttttGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCA‑GAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGGAAAACGCCGTAgc                                                                       >  2:880218/4‑149 (MQ=12)                                                                      tGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCCGAACGCA‑GAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCCTGACGAACTCAGAAGTGAACCGCCCTAgcg                                                                      >  2:715467/1‑149 (MQ=11)                                                                      tGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCA‑GAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAGGTGAAACGCCGTAgcg                                                                      >  1:247200/1‑149 (MQ=17)                                                                       gTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCA‑GAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAgcgc                                                                     <  2:951639/149‑1 (MQ=32)                                                                          ttGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCA‑GAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGa                                                                  <  1:909121/149‑1 (MQ=32)                                                                          ttGGCGGATTGAGAGAACATCTTCAGCCTGATACAGAGTAAATCAGAACGCA‑GAAGCGCTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGAGCCGa                                                                  <  1:319068/149‑1 (MQ=11)                                                                               ggATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCA‑GAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTa                                                             <  1:932084/149‑1 (MQ=32)                                                                                                                                  ggggTCTGAGAAAACAAAATTTGTCCTGCGGCCGGAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCGAATTaa           <  2:963424/147‑1 (MQ=11)                                                                                                                                  gctgTCTGATAAAACAGCATTTGCCGTGCGGCCGTAGCGCGCTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTACCGCCGAGGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGCGAACTGCCAGGCATCAAATTaa           <  2:562215/146‑1 (MQ=11)                                                                                                                                   ctgTCTGATAAAACAGAAATCGCCTGGCGGCCGTAGCGCGGGGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGGCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAg          <  1:10027/147‑1 (MQ=255)                                                                                                                                    ggTCTTATAAAACAGAACTTGCTTGTCGGTCGTAGCGCGGTGTTCGCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGGAGCGGCGATGGTAGTGTGGGGTCTCACCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGc         <  2:354864/149‑1 (MQ=11)                                                                                                                                     gTCTGATAAAACAGAATTTGCCTGGCGGCCGGAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTACTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGCa        <  2:998458/149‑1 (MQ=17)                                                                                                                                        tGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCCCAAGACCACATGCGGGACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGACCTGCCAGGCATCAAATTAAGCACTa     >  2:711942/1‑149 (MQ=11)                                                                                                                                           tAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCATCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGCAGTAAGc  <  1:459645/149‑1 (MQ=14)                                                                                                                                           |                                                                                                                                                     TAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCA‑GAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGCAGTAAGC  >  NC_000913_3_hsa_tpiA/228607‑228892

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.