New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	349605 =	NA (NA)	5 (0.090)	5/268	7.9	NA	noncoding (1/365 nt)	REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences	REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences
	?	NC_000913_3_hsa_tpiA	349637 =	NA (NA)					noncoding (33/365 nt)	REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences	REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences
Rejected: Coverage evenness skew score above cutoff.

AGAAAAGCGTCATCGACACCATGCAGACCCGCAACGAGCTGTACGAAAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAG  >  NC_000913_3_hsa_tpiA/349460‑349752                                                                                                                                                  |                                                                                                                                                     aGAAAAGCGTCATCGAAACCACGCAGACCCGCAACGAGCTGTACGAAAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCt                                                                                                                                                   <  1:615122/149‑1 (MQ=255)   aaaaGCGGCATCGACACCATGAACAACCGCAACGAGCTGTACGAAAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGa                                                                                                                                                 <  2:627941/149‑1 (MQ=255)    aaggCGTCAGCGACACCATGCAGTCCCGCAACGAGCTGTACGAAAGCATCAACGACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGAt                                                                                                                                                <  2:588863/146‑1 (MQ=255)      tccgatctCGACACCATGCAGACCCGCAACGAGCTGTACGAAAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGAAAGGGGTGGGTATTCGACAGCCGATGCCTGATGc                                                                                                                                              <  1:1050397/142‑1 (MQ=255)        cGTCATCGCCACCGTGCAGACCCGCAACGAGCTGTACGAAAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTgcagcgc                                                                                                                                            >  2:129387/1‑143 (MQ=255)          tCATCGACACCATGCAGACCCGCAACGAGCTGTACGAAAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCg                                                                                                                                          >  2:67523/1‑149 (MQ=255)                   ccATGCAGACCCGCACCGAGCTGTACGAAAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGa                                                                                                                                 <  2:616901/149‑1 (MQ=255)                    cATGCAGACCCGCAACGAGCTGTACGAAAGCATCAACTACTAGCAGTACGAAGAGAAGCTCGACAACCTGTTTGCACGTAGCCAGGTGAAATAAAAATCGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACACGAc                                                                                                                                >  2:1004999/1‑149 (MQ=255)                        cAGACCCGCAACGAGCTGTACGAAAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACttct                                                                                                                            >  1:892844/1‑147 (MQ=255)                             ccGCAACGAGCTGTACGAAAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTTTTCAGTCCGTACATGTTGCGTCGCTGCGGCGACTTATCAGGc                                                                                                                       >  2:1016531/1‑149 (MQ=255)                             ccGCAACGAGCTGTACGAAAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGc                                                                                                                       >  2:747339/1‑149 (MQ=255)                               gCAACGAGCTGTACGAAAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCt                                                                                                                     <  1:475754/149‑1 (MQ=255)                                 aaCGAGCTGTACGAAAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGCAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTAc                                                                                                                   >  2:387735/1‑149 (MQ=255)                                    gAGCTGTACGAAAGCACCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑Ag                                                                                                               <  1:680069/149‑1 (MQ=255)                                      gCTGTACGAAAGCAACAACTACCACCAGTACGAAGATAATCTCTACATCCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGt                                                                                                             <  1:363778/149‑1 (MQ=38)                                         gTACGAAAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGa                                                                                                                                 >  1:932321/1‑127 (MQ=255)                                         gTACGAAAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGa                                                                                                                                 <  2:932321/127‑1 (MQ=255)                                         gTACGAAAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCa                                                                                                          <  2:266798/149‑1 (MQ=255)                                          tACGAAAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCAc                                                                                                         >  1:155016/1‑149 (MQ=255)                                             gAAAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGa                                                                                                      >  2:736522/1‑149 (MQ=255)                                             gAAAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGa                                                                                                      >  2:118376/1‑149 (MQ=255)                                              ggaggagcAACCACGACTAGTAAGAAGAGAAGCGATACAACCTGTTGGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGTTTTTATTCGACAGCCGATGCCTGATGTGTCGCTGACGCGACTTATCAGTCCTACG‑AGGTGCACTGaa                                                                                                     <  2:377385/142‑1 (MQ=255)                                              aaaGCATCAACTAGTACCAGTACGAAGATAAGCTCGACAATCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGaa                                                                                                     <  2:207640/149‑1 (MQ=255)                                              aaaGAATCAACCACTAGCAGCACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGaa                                                                                                     <  2:641713/149‑1 (MQ=255)                                                aGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACt                                                                                                   <  1:736522/149‑1 (MQ=255)                                                 tcagcAACTACAACCAATACGAAGAGAAGCACGACAACCTGTTTGCCCGTAGCCAGTTGAAATAATAAACGCCCGTTGATTGTATTCGACAGCCGGTGCCTGATGCGTCGCTGACGCGACCTATCAGGCCTACG‑AGGTGCACTGAACTg                                                                                                  <  2:644135/145‑1 (MQ=255)                                                      aaCTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGGGCCCTGAACGTTAGGt                                                                                             >  2:401949/1‑149 (MQ=255)                                                        ctactaCCAGTACGAAGAGAAGCTCGACACCCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCg                                                                                           <  1:111445/149‑1 (MQ=255)                                                              ccAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACt                                                                                                                               <  2:756358/108‑1 (MQ=255)                                                              ccAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACt                                                                                                                               >  1:756358/1‑108 (MQ=255)                                                               cAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGa                                                                                    >  1:140753/1‑149 (MQ=255)                                                                 gTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCACGTTGGTTGGATTCGACAGCAGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGAACTGAACTGTAGGTCGGATAAGACg                                                                                  >  1:1043912/1‑149 (MQ=25)                                                                    cGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGAGTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGAt                                                                               <  1:934488/149‑1 (MQ=255)                                                                     gAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGcc                                                                                                                                                    <  1:1018820/80‑1 (MQ=255)                                                                     gAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGcc                                                                                                                                                    >  2:1018820/1‑80 (MQ=255)                                                                      aaGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATgg                                                                             >  2:638450/1‑149 (MQ=255)                                                                       agagAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGaa                                                                                                     <  1:434909/124‑1 (MQ=255)                                                                       agagAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGaa                                                                                                     >  2:434909/1‑124 (MQ=255)                                                                           aaGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATg                                                                              <  1:790122/143‑1 (MQ=255)                                                                           aaGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATg                                                                              >  2:790122/1‑143 (MQ=255)                                                                             gcgcGACAACCTGTTTGCCCGTAGCCAGGTGAGATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTCCGTAGTTGTA‑TAATCAGTAGGTCGGATAAGACGGATGGCGTCGCa                                                                      >  2:223478/4‑149 (MQ=25)                                                                               tCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGCATGGCGTCGCATc                                                                    >  2:157498/1‑149 (MQ=255)                                                                                  aCAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGGGCACTGAACTGTAGGTCGGATAAGACGGATGGGGTGGCATCCGa                                                                 >  1:436955/1‑149 (MQ=255)                                                                                  aCAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGCCCTCCG‑AGGCGCCCTGCACCGTCGGCCGGATAAGACGGATGGCGTCGCATCCGa                                                                 >  1:938500/1‑149 (MQ=255)                                                                                   cAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGAATGGCGTCGCATCCGAc                                                                >  2:241781/1‑149 (MQ=255)                                                                                     aCCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACaa                                                              <  1:521420/149‑1 (MQ=255)                                                                                     aCCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACaa                                                              <  2:614595/149‑1 (MQ=255)                                                                                               ccGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTGCG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACTGATGCCTg                                                    >  1:942282/1‑149 (MQ=255)                                                                                               ccGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATaa                                                                                      <  1:798741/115‑1 (MQ=255)                                                                                               ccGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATaa                                                                                      >  2:798741/1‑115 (MQ=255)                                                                                                cGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGa                                                   <  1:924046/149‑1 (MQ=255)                                                                                                 gTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGAt                                                  >  1:900297/1‑149 (MQ=255)                                                                                                     ccAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATgcgc                                              >  1:53434/1‑149 (MQ=255)                                                                                                     ccAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATgcgc                                              <  2:900297/149‑1 (MQ=255)                                                                                                         gTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGc                                                       <  1:431074/136‑1 (MQ=255)                                                                                                         gTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGc                                                       >  2:431074/1‑136 (MQ=255)                                                                                                          tGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGGCGGATGGCGTTCCATCCGACAACCGATGCCTGATGCGGCGCTg                                         >  2:423363/1‑149 (MQ=255)                                                                                                           gAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGa                                        >  2:1008241/1‑149 (MQ=255)                                                                                                           gAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGa                                        <  1:421255/149‑1 (MQ=255)                                                                                                              aTAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGAt                                                                                        <  2:330723/98‑1 (MQ=255)                                                                                                              aTAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGAt                                                                                        >  1:330723/1‑98 (MQ=255)                                                                                                               tAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGATGACTCGACTTTTCGGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTg                                    >  2:971083/1‑149 (MQ=255)                                                                                                                aaacaaCGACCGTTGATTGTCGTCGATAGCCGATGCCTGAGCCGTCGCGCACGCGACTTATCAGGCCTACG‑AGGCGCACTGAACTGTAGGTCGGATACGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGa                                   <  2:23060/149‑1 (MQ=17)                                                                                                                aaaaaaCGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATc                                                                    <  1:675499/116‑1 (MQ=255)                                                                                                                aaaaaaCGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATc                                                                    >  2:675499/1‑116 (MQ=255)                                                                                                                         ccGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAgg                          >  1:1004392/1‑149 (MQ=255)                                                                                                                          cGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACgc                                     <  2:274142/137‑2 (MQ=255)                                                                                                                          cGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACgc                                     >  1:274142/1‑136 (MQ=255)                                                                                                                                 tGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAg                           <  2:394114/140‑1 (MQ=255)                                                                                                                                 tGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAg                           >  1:394114/1‑140 (MQ=255)                                                                                                                                 tGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACggg                  <  1:118376/149‑1 (MQ=255)                                                                                                                                  gTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACgggg                 <  1:387735/149‑1 (MQ=255)                                                                                                                                   tATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGt                >  1:428574/1‑149 (MQ=255)                                                                                                                                    aTTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTAc                                                                                                                   >  2:591810/1‑50 (MQ=255)                                                                                                                                    aTTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTAc                                                                                                                   <  1:591810/50‑1 (MQ=255)                                                                                                                                     ttCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑GGGTGCAATGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAAGCCTACGGGGTGc              >  2:710353/1‑149 (MQ=255)                                                                                                                                     ttCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGAAGCGCCGCTGACGTGGCTTATCAGGCCTACGGGGtcg              >  2:305332/1‑147 (MQ=255)                                                                                                                                     ttCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACAGATTCCTGATGCGCCGCTGTCATGACTACTCAGGCCACCGGGGTga              >  1:445673/1‑148 (MQ=17)                                                                                                                                                 tGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAg  <  1:67523/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                     AGAAAAGCGTCATCGACACCATGCAGACCCGCAACGAGCTGTACGAAAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACG‑AGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAG  >  NC_000913_3_hsa_tpiA/349460‑349752

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.