New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	2811348 =	40 (0.810)	4 (0.090)	4/264	6.6	9.2%	intergenic (+48/‑79)	mprA/emrA	transcriptional repressor of microcin B17 synthesis and multidrug efflux/multidrug efflux system
	?	NC_000913_3_hsa_tpiA	2811372 =	42 (0.910)					intergenic (+72/‑55)	mprA/emrA	transcriptional repressor of microcin B17 synthesis and multidrug efflux/multidrug efflux system
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACAACAGAAAAAGATCAGCTCGAGCAAATCACCCGCAAATTGCTCTCCCGTCTCGACCAGATGGAACAAGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCTGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAACCGGTAAAGAAGAGCGGCAAACGTAAGCGTC  >  NC_000913_3_hsa_tpiA/2811202‑2811493                                                                                                                                                   |                                                                                                                                                  acaacaGAAAAAGATCAGCTCGAGCAAATCACCCGCAAATTGCTCTCCCGTCTCGACCAGATGGAACAAGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATAACTGGc                                                                                                                                                 >  2:560389/1‑149 (MQ=255)   aacaGAAAAAGATCAGCTCGAGCAAATCACCCGCAAATTGCTCTCCCGTCTCGACCAGATGGAACAAGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCa                                                                                                                                               >  1:447174/1‑149 (MQ=255)   aacaGAAAAAGATCAGCTCGAGCAAATCACCCGCAAATAGCTCTCCCGTCTCGACCAGATGGAACAAGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAACATCCAGATTTATACAAGGAAAAATGACTGGCCa                                                                                                                                               >  2:195465/1‑149 (MQ=255)       gAAAAAGATCAGCTCGAGCAAATCACCCGCAAATTGCTCTCCCGTCTCGACCAGATGGAACAAGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCCCGCTCAAAAATCCAGATTAATAAAAGAAAAAATGACAGGCCAGCAt                                                                                                                                           >  1:13366/1‑149 (MQ=255)           aaGATCAGCTCGAGCAAATCACCCGCAAATTGCTCTCCCGTCTCGACCAGATGGAACAAGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCa                                                                                                                                       >  2:196552/1‑149 (MQ=255)               tCAGCTCGAGCAAATCACCCGCAAATTGCTCTCCCGTCTCGACCAGATGGAACAAGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACAt                                                                                                                                   >  2:22468/1‑149 (MQ=255)                  gCTCGAGCAAATCACCCGCAAATTGCTCTCCCGTCTCGACCAGATGGAACAAGACGGTGTGGTTCTCGAGGCGATGAGCTAACGCGTCATCCCGCTCGAAAATCCAGATCTATAAAAGATAAAAAGACTAGCCAGCATCCGAAGATGCt                                                                                                                                >  2:598942/1‑149 (MQ=255)                   cTCGAGCAAATCACCCGCAAATTGCTCTCCCGTCTCGACCAGATGGAACAAGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCTg                                                                                                                               >  1:662928/1‑149 (MQ=255)                            aTCACCCGCAAATTGCTCTCCCGTCTCGACCAGATGGAACAAGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGCTTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCTGGCCTTTTTg                                                                                                                      >  2:5872/1‑149 (MQ=255)                             tCACCCGCAAATTGCTCTCCCGTCTCGACCAGATGGAACAAGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCTGGCCTTTTTgg                                                                                                                     <  1:653654/149‑1 (MQ=255)                              cACCCGCAAATTGCTCTCCCGTCTCGACCAGATGGAACAAGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCTGGCCTTTTTGGc                                                                                                                    >  2:175226/1‑149 (MQ=255)                                gccGCAAATCATTCTCCCGGCTGGACCAGAGGGAAGAAGGCGGGGTGGTTCTAGAGGTAATCAGCTAACTAGTCATCTCGCTCAAAAATCCAGATTAAAAAAAAAAAAAATGACTGGCCAGCATCGCTACATGCTGGCCTTTTTGGCaa                                                                                                                  <  2:767493/148‑1 (MQ=255)                                 ccGCAAATTGCTCTCCCGTCTCGACCAGATGGAACAAGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAACTGACTGGCCAGCATCGCAACATGCTTGCCTTTTTGACacg                                                                                                                 >  2:14152/1‑147 (MQ=255)                                 ccGCAAATTGCTCTCCCGTCTCGACCAGATGGAACAAGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCTGGCCTTTTTGGCAAg                                                                                                                 >  2:847009/1‑149 (MQ=255)                                 ccGCAAATTGCTCTCCCGTCTCGACCAGATGGAACAAGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCTGGCCTTTTTGGCAAg                                                                                                                 <  1:818988/149‑1 (MQ=255)                                                     tcGACCAGATGGAACAAGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCTGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGa                                                                                             <  1:415703/149‑1 (MQ=255)                                                                    aaGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCTGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTg                                                                              <  1:292205/149‑1 (MQ=255)                                                                     aGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCTGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGt                                                                               >  1:807213/1‑147 (MQ=255)                                                                     aGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCTGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGt                                                                               <  2:807213/147‑1 (MQ=255)                                                                      gACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCGGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCTGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGga                                                                            >  1:840816/1‑149 (MQ=255)                                                                         ggTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGGCAGCATCGCAACATGCTGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTg                                                                              <  1:567362/144‑1 (MQ=255)                                                                         ggTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCTGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTg                                                                              >  2:567362/1‑144 (MQ=255)                                                                           tgtgGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCTGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTTAGACGATCGTGGAGAACa                                                                       >  1:701577/1‑149 (MQ=255)                                                                           tgtgGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCTGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACa                                                                       >  2:305483/1‑149 (MQ=255)                                                                            gtgGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACGTGCTGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGGACaa                                                                      >  1:672782/1‑149 (MQ=255)                                                                               gTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCTGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAatat                                                                   <  1:252833/149‑1 (MQ=255)                                                                                 tctcGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCGGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCTGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGa                                                                 <  2:840816/149‑1 (MQ=255)                                                                                            tGAGCTACTGAGTTATCTCGCTCGAAGGCCGAGAGTTATAAAAGAAAAAAGGACGGGCCAGGATCGCAACATGCTGGCGTTTGTGGCAAGCAGGTCGGCTCAGCTGATGAGTTAAGAAGATCGTGGAGAACAATATGGGCGCAAATGCg                                                      <  2:389959/149‑1 (MQ=255)                                                                                                  aaCGCGTCATCTCGCTCAAAAATTCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCTGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACt                                                <  1:101984/149‑1 (MQ=255)                                                                                                         cATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCTGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAAccc                                         <  2:687070/149‑1 (MQ=255)                                                                                                             tcGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCTGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGCGACTCAAACCCCgca                                     >  2:256846/1‑149 (MQ=255)                                                                                                                         ccAGATTTATAAAAGAAAAAATGACGGGCCAGCATCGCAACATGCTGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAACCGGTaaa                         <  1:236453/149‑1 (MQ=255)                                                                                                                           aGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCTGGCCTTTTTGGCAAGCAGGTCGGCTCAGGCGATGAGTTAATAAGAGCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCAGCAACAACCGGTAaaga                       >  1:411977/1‑149 (MQ=255)                                                                                                                           aGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCTGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAACCGGTAaaga                       <  2:662928/149‑1 (MQ=255)                                                                                                                                tataAAAGAAAAAATGACTGGCCAGCATCGCAACATGCTGGCCTTTTTGGCAAGCAGGTCGTCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAACCGGTAAAGACGAGc                  <  2:662758/149‑1 (MQ=255)                                                                                                                                 ataAAAGAAAAAATGACTGGCCAGCATCGCAACATGCTGGCCTTTTTGGCAAGCAGGTCGGCCCAGCCGATGCGATAGGTATACCTGGGAGAACAATATGAGCGCAAATGCGGAGCCTCAAACCCCGCAGCAACCGGTACAGAAGAGCg                 >  2:656707/1‑149 (MQ=255)                                                                                                                                  taAAAGAAAAAATGACTGGCCAGCATCGCAACATGCTGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAACCGGTAAAGAAGAGCgg                <  2:447174/149‑1 (MQ=255)                                                                                                                                   aaaaGAAAAAATGACTGGCCAGCATCGCAACATGCTGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAACCGGTAAAGAAGAGCGGc               >  1:107803/1‑149 (MQ=255)                                                                                                                                   aaaaGAAAAAATGACTGGCCAGCATAGCAACATGCTGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTTAGAAGATCGTGGCGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAACAACCGGTAAAGAAGAGCGGc               >  1:434432/1‑149 (MQ=255)                                                                                                                                                aCTGGCCAGCATCGCAACATGCTGGCCTTTTTGGCAAGCAGGTCGGCTCAGTCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAACCGGTGAAGAAGAGCGGCAAACGTAAGCGTc  <  2:58102/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                  ACAACAGAAAAAGATCAGCTCGAGCAAATCACCCGCAAATTGCTCTCCCGTCTCGACCAGATGGAACAAGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCTGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAACCGGTAAAGAAGAGCGGCAAACGTAAGCGTC  >  NC_000913_3_hsa_tpiA/2811202‑2811493

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.