New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	2375824 =	6 (0.120)	42 (0.870)	33/274	0.6	87.8%	coding (139/963 nt)	menC	O‑succinylbenzoyl‑CoA synthase
	?	NC_000913_3_hsa_tpiA	= 2515613	NA (NA)					intergenic (+170/+30)	insL1/yfeA	IS186 transposase/putative diguanylate cyclase

TCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTGCGTCTCGACAAACTCCGCGACCACACTCAAT  >  NC_000913_3_hsa_tpiA/2515473‑2515760                                                                                                                                             |                                                                                                                                                    tCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAAt                                                                                                                                             >  1:446610/1‑149 (MQ=32)    ggtgatgaCAGGTGGCCATTCGGGGGACTGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTGAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTcc                                                                                                                                          <  1:422851/142‑1 (MQ=11)          tACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTCGCGCTTATGGGATAATTgccttgtt                                                                                                                                    <  2:586114/149‑6 (MQ=255)               gTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGttttttt                                                                                                                               >  2:542961/1‑149 (MQ=40)                     aTTCGTGGGACAGTACCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCt                                                                                                                         <  1:287903/149‑1 (MQ=255)                           gggACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACCCCTGTTCAt                                                                                                                   >  2:199360/1‑149 (MQ=255)                             gACAGTATCCATGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCa                                                                                                                 <  2:723349/149‑1 (MQ=255)                                 gTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATAAGCTa                                                                                                             >  1:274694/1‑149 (MQ=255)                                  tATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGCCGTCGCATTCTTCAGAGGGTTCAACTCTTAAGTTAGCGCTTATGGGATTATTCCCCCGCTTTTTTACGCCTGTTAACTAGCTac                                                                                                            >  2:831877/1‑148 (MQ=14)                                   aTCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAAt                                                                                                           <  1:362724/149‑1 (MQ=255)                                     cccTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATgg                                                                                                         >  2:334540/1‑149 (MQ=255)                                       cTGACAGCCTACAAAACGCAATTGAAGACAGCTAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCt                                                                                                       >  1:210186/1‑149 (MQ=255)                                           cAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGGGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCgg                                                                                                   <  1:57001/149‑1 (MQ=255)                                               cTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGa                                                                                               <  1:369096/149‑1 (MQ=255)                                                tACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGGCGCATTCTTCAGATGGTTCAACCCTTAAGTTCGCGCTTGTGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCCGCTAATGGCGGCGGGcagc                                                                                              >  1:70684/1‑146 (MQ=18)                                                 aCAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCATCTAATGGCTGCGGGCGAcc                                                                                             >  2:506354/1‑149 (MQ=255)                                                        gCAATTGAAGAACGCGAGGGATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCaaa                                                                                      <  1:204078/149‑1 (MQ=255)                                                          aaTTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTc                                                                                                                                           <  1:294635/94‑1 (MQ=35)                                                          aaTTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTc                                                                                                                                           >  2:294635/1‑94 (MQ=35)                                                           aTTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATAc                                                                                   >  2:44827/1‑149 (MQ=255)                                                            ttGGAGAACGCGAGGCATCGTTTTAACGAGGGACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATAcc                                                                                  <  2:95885/149‑1 (MQ=255)                                                                 gaaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGGTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGc                                                                             >  1:439516/1‑149 (MQ=255)                                                                  aaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATgg                                                                                                         <  2:817874/120‑1 (MQ=255)                                                                  aaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATgg                                                                                                         >  1:817874/1‑120 (MQ=255)                                                                  aaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCtt                                                                               <  1:359512/146‑1 (MQ=255)                                                                  aaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCtt                                                                               >  2:359512/1‑146 (MQ=255)                                                                  aaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCa                                                                            <  1:474810/149‑1 (MQ=255)                                                                   ccgcgAGGGATCGTCTTAACGGGGCACCGAGGCGTCGCATTCTTGAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAg                                                                           <  2:130607/148‑1 (MQ=255)                                                                   aCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGttttt                                                                                                                                 <  2:363077/95‑1 (MQ=255)                                                                   aCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGttttt                                                                                                                                 >  1:363077/1‑95 (MQ=255)                                                                          gCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCACCTAATGGCTGCGGGCGACCAATCACATACCCTTGCAGATCTTGc                                                                    >  2:246680/1‑149 (MQ=255)                                                                           cATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCa                                                                   <  1:334540/149‑1 (MQ=255)                                                                                  ttAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCACTCAAATACCCTTGAATATATTGCACCCCGAg                                                            >  2:146036/1‑149 (MQ=255)                                                                                        aGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATg                                                      <  1:675580/149‑1 (MQ=255)                                                                                          gCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCa                                                    >  2:39300/1‑149 (MQ=255)                                                                                            aCCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAACTACCCTTGCACATATTGCACCCCCACCTTATGCCAt                                                  >  2:336548/1‑149 (MQ=37)                                                                                                aGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGGTAGCGCTTATGGGATAATTCCCCGGTTGTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACAAATCAAATACCTTTCGAGATATTGCACGCCGGGCTTATGAAATAgcg                                              >  1:187651/1‑149 (MQ=37)                                                                                                 ggCGTCCCATTCTCCAGATGGTTCAACCCTCAAGTTAGCGCTTATGGGATAATTCCCCAGGTTTTTTACGCCTGTTAATCAGCTAACGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAgcgc                                             <  1:201445/149‑1 (MQ=255)                                                                                                          ttcttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCctgctgctg                                    <  1:542961/149‑1 (MQ=255)                                                                                                             ttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTc                                                                                                                                           <  1:633421/43‑1 (MQ=255)                                                                                                             ttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTc                                                                                                                                           >  2:633421/1‑43 (MQ=255)                                                                                                             ttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTTTTTTTTTTTATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGACCTTATGCAATACCGCCTGCTGCTTTTg                                 >  2:128948/1‑149 (MQ=38)                                                                                                             ttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTg                                 >  2:47149/1‑149 (MQ=255)                                                                                                                   tGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCCATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTGCGtctc                           <  1:319695/149‑1 (MQ=255)                                                                                                                      ttCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTGCGTCTCGAc                        >  1:46459/1‑149 (MQ=255)                                                                                                                      ttCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAAAGGGGCCTGCTGCTGTTGCGTCTCGAc                        >  1:136324/1‑149 (MQ=255)                                                                                                                         aaCCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCGGTTCCGTCTCGACaaa                     >  2:740883/1‑149 (MQ=255)                                                                                                                            ccTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGACCTTATGCAATACGGCCTGCTGCTGTTCCGTCCCGACAAACTc                  >  2:811647/1‑149 (MQ=255)                                                                                                                             cTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTGCGTCTCGACAAACTcc                 >  1:520819/1‑149 (MQ=255)                                                                                                                              ttAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTGCGTCTCGCCAAACTccc                >  2:239487/1‑148 (MQ=255)                                                                                                                                          ttAGGGGATAATTCCCCGGATTTTTTAAGGATGTTAATCAGCTAAGGGCTGCGGGCGACCAATCGAATACCCTTGCCGATATTGCACCCGGAGCTTATGCAATAAAGCCTGCTGCTGTTGCGTCTCGACAAAATCCGCGA‑CACACACaa   >  2:536491/1‑149 (MQ=255)                                                                                                                                           tATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTGCGTCTCGACAAACTCCGCGACCACACTCaa   <  1:608622/149‑1 (MQ=255)                                                                                                                                            aTGGGATAATTCCCCGGTTTTTTTACGCCTGTCAAACACTTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTGCGTCTCGACAAACTCCGCGACCACACTCAAt  <  1:676466/149‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                    TCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTGCGTCTCGACAAACTCCGCGACCACACTCAAT  >  NC_000913_3_hsa_tpiA/2515473‑2515760

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.