Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913_3_hsa_tpiA 4,111,662 G→A L179L (CTG→TTG)  yiiQ ← DUF1454 family putative periplasmic protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913_3_hsa_tpiA4,111,6620GA95.8% 145.7 / NA 48L179L (CTG→TTG) yiiQDUF1454 family putative periplasmic protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base A (30/16);  minor base C (1/1);  total (31/17)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCAT‑CGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGTAATAACGTTTGTTTTTCCCCGCCGTTAGTAGCGACTGCAGTTTTTTCTGGCTTTGTGTTTTGGTCATTAATGGGGTGAGTGTGCGGAT  >  NC_000913_3_hsa_tpiA/4111517‑4111806
                                                                                                                                                  |                                                                                                                                                
aaaGGAAGATGGGCGCCCCGCAGGGCAGTAGGTCTGTGATCTTGTCTCGTGCTTCTTGCGTGACAAA‑GCTTTGCTTTTTGTCATTTATGCAAACCGTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAAccc                                                                                                                                               <  2:184553/149‑1 (MQ=255)
aaaGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGCGAAACAGGATAGAGATTCAT‑TGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAAccc                                                                                                                                               >  1:645839/1‑149 (MQ=255)
   ggAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCAT‑CGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAAccc                                                                                                                                               <  1:351064/146‑1 (MQ=255)
   ggAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCAT‑CGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAAccc                                                                                                                                               >  2:351064/1‑146 (MQ=255)
    gAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCAT‑CGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAACCCCttt                                                                                                                                           >  1:122071/1‑149 (MQ=255)
      aGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCAT‑CGGCACAAAGGCTGTGCTTTTTGTCATTGATTCAAACCGTCAAGCGATTCAGGTAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAACCCCTTTTc                                                                                                                                         <  1:407462/149‑1 (MQ=255)
                 ccGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCAT‑CGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAACCCCTTTTCGCCCTTGTCcg                                                                                                                              >  1:305046/1‑149 (MQ=255)
                  cGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCAT‑CGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGCTTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAACCCCTTTTCGCCGTTGTCcgc                                                                                                                             >  2:548338/1‑149 (MQ=255)
                  cGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCAT‑CGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAACCCCTTTTCGCCTTTGTCcgc                                                                                                                             >  2:269375/1‑149 (MQ=255)
                       ggCAGCAGGGCTGTGAAACTGTATAGAGATTCAT‑CGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACCGCGAAGGTCAACCCCTTTTCGCCGTTGTCCGCGacaa                                                                                                                        <  2:176757/149‑1 (MQ=255)
                        gcagcaGGTCTGTGAAACAGTATAGAGATTCAT‑CGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAACCCCTTTTCGCCGTTGTCCGCGccaac                                                                                                                       >  1:254854/1‑149 (MQ=255)
                          agcagGTCTGTGAAACAGTATAGAGATTCAT‑CGGCACAAAGGCCTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAACCCCTTTTCGCCGTTGTCCGCGACAACAt                                                                                                                     <  1:276035/149‑1 (MQ=255)
                               gTCTGTGAAACAGTATAGAGATTCAT‑CGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAACCCCTTTTCGCCGTTGTCCGCGACAACATAACGc                                                                                                                >  1:511339/1‑149 (MQ=255)
                                  tgtgAAACAGTATAGAGATTCAT‑CGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAACCCCTTTTCGCCGTTGTCCGCGACAACATAACACAGt                                                                                                             >  2:678961/1‑149 (MQ=255)
                                   gtgAAACAGTATAGAGATTCAT‑CGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAACCCCTTTTc                                                                                                                                         <  1:214734/120‑1 (MQ=255)
                                   gtgAAACAGTATAGAGATTCAT‑CGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAACCCCTTTTc                                                                                                                                         >  2:214734/1‑120 (MQ=255)
                                    tgAAACAGTATAGAGATTCAT‑CGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAACCCCTTTTCGCCGTTGTCCGCGACACCATAACGCAgcgc                                                                                                           >  2:333426/1‑149 (MQ=255)
                                          aGTATAGAGATTCAG‑CGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAACCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTc                                                                                                     <  2:115583/149‑1 (MQ=255)
                                              taGAGATTCAT‑CGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAACCCCTTTTCGCCGTTGTCCGCGacaa                                                                                                                        <  2:352419/126‑1 (MQ=255)
                                              taGAGATTCAT‑CGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAACCCCTTTTCGCCGTTGTCCGCGacaa                                                                                                                        >  1:352419/1‑126 (MQ=255)
                                              taGAGATTCAT‑CGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAACCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACGTTCTGtc                                                                                                 >  1:740815/1‑149 (MQ=255)
                                              taGAGATTCAT‑CGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAACCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGtc                                                                                                 >  1:740824/1‑149 (MQ=255)
                                               agagATTCAT‑CGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAACCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGtct                                                                                                <  2:529296/149‑1 (MQ=255)
                                                                aaaGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAAACAGTTCTGCCTGGGGTCGGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGTAATAACgttt                                                                                >  1:420541/1‑149 (MQ=255)
                                                                    ggtgtgctttTTGGCATTTATTCAAACCATCAAGCGATTCAGATAGCGTCAGCTTAATCGGTTCAACAGCGAAGGTCACCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCCCCTTCTGTCCCGGTGTAATAACgtttgttt                                                                            <  2:516536/145‑1 (MQ=255)
                                                                     ctttgctttTTGTAATTTATTCAAACCTTCAAGCGATTAAGATAGCGCCCGCTTAATCGGTTCAACAGCGAAGGTCAACCACTTTTCGCCGTGGTCTGCGAACACATAACGCAACGCACCTTCTTTCTCGGTGTAATAACgtttctttc                                                                           >  2:463189/1‑148 (MQ=255)
                                                                       ttgctttTTGTCATTTATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAACCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGTAATAACGTTTGTTTTTc                                                                         >  1:410193/1‑149 (MQ=255)
                                                                          ttttttCTCTTTTTTTCAAACCTTCAAGCGATTCAGTTAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAACCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGTAATAACGTTTGTTTTTcccc                                                                      <  2:410193/148‑1 (MQ=255)
                                                                          ctttTTGTCATTTATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAACCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGTAATAACGTTTGTTTTTcccc                                                                      >  1:744723/1‑149 (MQ=255)
                                                                                    tttATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAACCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGTAATAACGTTTGTTTTTCCCCGCCGTtagaa                                                            >  2:635843/1‑147 (MQ=255)
                                                                                        ttCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAACCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGTAATAACGTTTGTTTTTCCCCGCCGTtagtggggc                                                        >  1:408459/1‑144 (MQ=255)
                                                                                           aaaCCTTCAAGCGATTCAGAGAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAACCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGTAATAACGTTTGTTTTTCCCCGCCGTTAGTAGCGACTg                                                     >  1:864199/1‑149 (MQ=255)
                                                                                                ctCAAGCGATCCAGATAGCGCCAGCTGAATCGGTTCAACAGCGAAGGTCAACCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGTAATAACGTTTGTTTTTCCCCGCCGTTAGTAGCGACTGCAGtt                                                <  1:347623/148‑1 (MQ=255)
                                                                                                          tCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAACCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGTAATAACGTTTGTTTTTCCCCGCCGTTAGTAGCGACTGCAGTTTTTTCTGGCt                                      <  1:279064/149‑1 (MQ=255)
                                                                                                            aGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAACCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGTAATAACGTTTGTTTTTCCCGGCCGTTAGTAGCGACTGCAGTTTTTTCTGGCttt                                    >  2:62074/1‑149 (MQ=255)
                                                                                                             gATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCACCCCCTCTTCGCCCTTGTCCGCCACAACATAACGCAGTCCTCCTCCGGTCTCGTTGTAATAACGTTGGTTTTTACCCCCCGTTAGTAGGTACTGCGGTTATTTCTGGCTTtg                                   >  2:143066/1‑149 (MQ=255)
                                                                                                             gATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAACCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGTAATAACGTTTGTTTTTCCCCGCCGTTAGTAGCGACTGCAGTTTTTTCTGGCTTtg                                   >  1:518054/1‑149 (MQ=255)
                                                                                                             gATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAACCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGTAATAACGTTTGTTTTTCCCCGCCGTTAGTAGCGACTGCAGTTTTTTCTGGCTTtg                                   >  1:518048/1‑149 (MQ=255)
                                                                                                                    ccAGCTTAATCGGTTCAACAGCGAAGGTCAACCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGTAATAACGTTTGTTTTTCCCCGCCGTTAGTAGCGACTGCAGTTTTTTCTGGCTTTGTGTTTTg                            <  1:239668/149‑1 (MQ=255)
                                                                                                                    ccAGCTAAATCGATACAACAGCGAACGTCAACCCCTTTTCGCCGTTCACCGCGACAACATAACGCAGTGCACCTACTGTCCCGGCGTAATAACGTTTGTTTTTCCCCGCCGTTAGTAGCGACTGCAGTTTTTTCTAGCTTTGTGTTTTg                            <  2:740824/149‑1 (MQ=255)
                                                                                                                        cTTAATCGGTTCAACAGCGAAGGTCAACCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGTAATAACGTTTGTTTTTCCCCGCCGTTAGTAGCGACTGCAGTTTTTTCTGGCTTTGTGTTTTGGTCa                        >  1:740868/1‑149 (MQ=255)
                                                                                                                             tCGGTTCAACAGCGAAGGTCAACCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGTAATAACGTTTGTTTTTCCCCGCCGTTAGTAGCGACTGCAGTTTTTTCTGGCTTTGTGTTTTGGTCATTAAt                   >  1:671585/1‑149 (MQ=255)
                                                                                                                               ggTTCAACAGCGAAGGTCAACACCTTTTCCCCGTTGTCCGAGACAACATAACACAGTGCACCTTATGTATCGGTGTAATAACGTTTGTTTTTCACCGGCGTTAATAGCAACTGCAGTTTTTTGTGGATTCGTGTTTTCGTCATAAATgg                 >  2:2565/1‑149 (MQ=255)
                                                                                                                                     aCAGCGAAGGTCAACCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGTAATAACGTTTATTTTTCCCCGCCGTTAGTAGCTACTGCAGTGTTTTCTGGCTTGGTGTTTTGGTCCTGAATGTGGTAAg           >  1:276681/1‑149 (MQ=255)
                                                                                                                                           aaGGTCAACCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGTAATAACGTTTGTTTTTCCCCGCCGTTAGTAGCGACTGCAGTTTTTTCTGGCTTTGTGTTTTGGTCATTAATGGGGTGAGTGTGCg     >  2:299437/1‑149 (MQ=255)
                                                                                                                                            aGGTCAACCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGTAATAAc                                                                                    >  1:661437/1‑69 (MQ=255)
                                                                                                                                            aGGTCAACCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGTAATAAc                                                                                    <  2:661437/69‑1 (MQ=255)
                                                                                                                                              gTCAACCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGTAATAACGTTTGTTTTTCCCCGCCGTTAGTAGCGACTGCAGTTTTTTCTGGCTTTGTGTTTTGGTCATTAATGGGGTGAGTGTGCGGAt  <  2:744723/149‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                
AAAGGAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCAT‑CGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGTAATAACGTTTGTTTTTCCCCGCCGTTAGTAGCGACTGCAGTTTTTTCTGGCTTTGTGTTTTGGTCATTAATGGGGTGAGTGTGCGGAT  >  NC_000913_3_hsa_tpiA/4111517‑4111806

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑