New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	2041152 =	NA (NA)	4 (0.100)	4/268	5.3	NA	noncoding (1/34 nt)	REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913_3_hsa_tpiA	2041182 =	NA (NA)					noncoding (31/34 nt)	REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

ACTGCTTTTAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTCCTAAGAGTTGTTGCATTTTGCTATATGTTACA  >  NC_000913_3_hsa_tpiA/2041034‑2041329                                                                                                                                                     |                                                                                                                                                    aCTGCTTTTAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCa                                                                                                                                                     <  2:284338/149‑1 (MQ=255)     cTTTTAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTCGCGCGAGCGCCCTATCCGGCATaca                                                                                                                                                 >  2:560774/1‑149 (MQ=255)            ccTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCg                                                                                                                                          >  2:71015/1‑149 (MQ=255)                  ggTATGAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAg                                                                                                                                    >  1:126756/1‑149 (MQ=255)                    tataAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGt                                                                                                                                  <  1:71015/149‑1 (MQ=255)                    tataAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGATCACAACAAATTATCTGTATCACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCAGACACATATCGCATCAGGt                                                                                                                                  >  2:190644/1‑149 (MQ=255)                         gaagTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGt                                                                                                                             >  1:190374/1‑149 (MQ=255)                            ggagCGGTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTc                                                                                                                          >  2:450666/4‑149 (MQ=255)                                 gTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTTTCGGCGAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTg                                                                                                                     >  2:691763/1‑149 (MQ=255)                                 gTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTg                                                                                                                     >  2:692211/1‑149 (MQ=255)                                   tCCCTTTTTAACCGGTTACGCAAGCAGGTTCACCACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGtc                                                                                                                   <  2:502174/149‑1 (MQ=255)                                    cccTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGa                                                                                                                                             <  1:88224/122‑1 (MQ=255)                                    cccTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGa                                                                                                                                             >  2:88224/1‑122 (MQ=255)                                      cTTTTTAGCCGGTTACGCAAGCAGGTTCACAACAAATTAACTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCGTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTAAGTTTCGTTTGtcatc                                                                                                                <  2:590066/149‑1 (MQ=255)                                      cTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGtcatc                                                                                                                >  2:194548/1‑149 (MQ=255)                                         tttAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAAc                                                                                                             <  2:105589/149‑1 (MQ=255)                                                     cGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCa                                                                                                 <  2:270258/149‑1 (MQ=255)                                                      gCAAGCAGGTTCACAACAAATTATCTGTATAACTTAATATTGCCGACAAAGTAAGCGTTATACCTGCCGGATGAGGCGCGAGCGCCCTATCCGCAATACACAGATCGCATCAGGTTATATTCCGTTTGTCATCAACATCAAATCACCac                                                                                                >  2:634926/1‑148 (MQ=255)                                                                 gacaacaAAGTCTCTGGATAGCGTCGTGCGGCCGACAAAGTACGCGTTATCTCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGAGCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAatttatt                                                                                     <  2:218516/148‑1 (MQ=255)                                                                    aacaaATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAAtttatttta                                                                                  >  1:33212/1‑149 (MQ=255)                                                                               tGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAaga                                                                       <  1:450666/149‑1 (MQ=255)                                                                               tGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTAAAATCACCAACATACCTTACTTCATTTCAATAaga                                                                       <  2:535232/149‑1 (MQ=255)                                                                                gTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAagat                                                                      >  2:328198/1‑149 (MQ=255)                                                                                 tatcACTTCATGTGCCTGACAAAGTACGCGTTATCCCTGCAGGATTTGGCTCCAGCGCCGTAGCCCACATACGCAGATCTCATCAGGTTCTGCTCCCCTTGTCATCAACCTCACATCACCAAACTGATTTTGTTTTTTTCAATAggata                                                                     >  2:124711/1‑149 (MQ=255)                                                                                       ttCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCCAAATAATTTATTTTCTTTTCATAtgatgtattac                                                               >  2:136426/1‑142 (MQ=255)                                                                                              tGCCCACAAAGTACGCGTTATCCGTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATATTTCGTTTTTCATCAGCCTCAAATCACCAAAATAATTTATCTTATTTCAATAAGATAGATAAGTAGAACt                                                        <  1:607932/149‑1 (MQ=255)                                                                                                   aCAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTACAATAAGATAGATAAGTAGAACTAAGaa                                                   >  1:111824/1‑149 (MQ=255)                                                                                                   aCAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAAGAATTTATTTTCTTTATAACAGATAGATAAGTAGAACTgagag                                                   >  2:31981/1‑148 (MQ=255)                                                                                                     aaaGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAg                                                 >  2:90262/1‑149 (MQ=255)                                                                                                         tACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAATATAATTTATTTTATTTTATTTAGATAGATTGGTAGTACTGTGATAGCGAt                                             >  1:55652/1‑149 (MQ=255)                                                                                                         tACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCAt                                             <  1:411578/149‑1 (MQ=255)                                                                                                         tACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATCCATTTCGCCCCAATAAGATAGATAAGTAGAACTGAGAAAGCCAt                                             <  1:173633/149‑1 (MQ=255)                                                                                                           cgcgTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGc                                           >  1:189389/1‑149 (MQ=255)                                                                                                            gcgTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAATATAGATAAGTAGAACTGAGAAAGCCATGct                                          >  2:405816/1‑149 (MQ=255)                                                                                                                 aTCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAAGCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGt                                     <  1:4300/149‑1 (MQ=255)                                                                                                                    tatGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTTAATAAGAAAGATAAGTAGAACTGAGAAAACGATGCTCTCGTTTc                                  >  2:558021/3‑149 (MQ=255)                                                                                                                        ccGGATAGGGCGCTCGCGCCACATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTTTTTCAATAAGATAGATAAGTAGAAGTGATAAAGCCATGCTTTCGTTTCTTaa                              >  2:36620/1‑149 (MQ=255)                                                                                                                           gATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTCCTAagag                           <  2:19704/149‑1 (MQ=255)                                                                                                                             tgtgGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTCCTAAGAgtt                         <  1:451821/149‑1 (MQ=255)                                                                                                                              gtgGCGCGAGTGCCTTATGGGGCATACACGGATCGCATCAGGTTATGTTTCGTTGGTCATGAAACTCAAATCACCAAAATAATTTATTTTATTTTAATAAGATGGATAAGTGGATCTGAGAAAGCCATGTTGTCGTTTCCTAAGAgttg                        <  2:418516/149‑1 (MQ=255)                                                                                                                                ggCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTCCTAAGAgttgtt                      <  1:341151/149‑1 (MQ=255)                                                                                                                                           ccTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATttattttatt                                                                                >  2:590978/1‑80 (MQ=255)                                                                                                                                           ccTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATttattttatt                                                                                <  1:590978/80‑1 (MQ=255)                                                                                                                                             tATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAACATAATTAATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTCCTAAGAGTTGTTGCATTTTGCtata         >  1:100701/1‑149 (MQ=255)                                                                                                                                                    cATACACAGATCGCATCATGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTCCTAAGAGTTGTTGCATTTTGCTATATGTTACa  <  1:560774/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    ACTGCTTTTAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTCCTAAGAGTTGTTGCATTTTGCTATATGTTACA  >  NC_000913_3_hsa_tpiA/2041034‑2041329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.