New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 41116457 (1.360)5 (0.130) 5/270 4.9 10.0% noncoding (87/191 nt) REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913_3_hsa_tpiA 3216675 = 36 (0.900)noncoding (75/78 nt) REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AATAAAACTCGCAAATGATAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATATGAGCCATCATCACGAAGGGTGTTGTAAACATGAAGGCCAGCCA  >  NC_000913_3_hsa_tpiA/3216528‑3216823
                                                                                                                                                   |                                                                                                                                                    
aataaaACTCGCAAATGATAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGGACGCCTTATCCGGCCt                                                                                                                                                     >  1:188434/1‑149 (MQ=255)
        tCGCAGATCATAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTga                                                                                                                                             <  1:51988/149‑1 (MQ=255)
          gCAAATGATAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTgaga                                                                                                                                           >  2:473019/1‑149 (MQ=255)
          gCAAATGATAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGGgaga                                                                                                                                           >  2:672782/1‑149 (MQ=255)
              atgataatgatTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAg                                                                                                                                       <  2:364753/149‑1 (MQ=255)
                 acaacgatTGTTAATCATGATAAATGAAAACGATTTGTAGAACTGATATGTCTTTACTCTGATAAGACGAACCGCCTCTTCTCAGCCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTcc                                                                                                                                    <  1:239427/144‑1 (MQ=39)
                             aaTCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGa                                                                                                                                        <  1:45383/133‑1 (MQ=255)
                             aaTCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGa                                                                                                                                        >  2:45383/1‑133 (MQ=255)
                              aTCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGGGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATc                                                                                                                       >  1:328957/1‑149 (MQ=255)
                                 aTGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCAtt                                                                                                                    >  2:383088/1‑149 (MQ=255)
                                   gATAAATGCAAGCGATTTGTAGAACCGATATGTCTATAGTCGGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAAACACATATTGGGTGTACTGGTCGCAGCCGTCCTACGTGTGAGATGAGTCCACGTTTAAAAATCAtttt                                                                                                                  <  1:708136/149‑1 (MQ=255)
                                    aTAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCAttttt                                                                                                                 >  1:240304/1‑149 (MQ=255)
                                    aTAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTCCCCGGAAATCGTTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCAttttt                                                                                                                 >  1:137736/1‑149 (MQ=39)
                                    aTAAATGCAAGCGATTTGTAGAACTAATAAGTTGTTAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCAttttt                                                                                                                 >  1:711782/1‑149 (MQ=39)
                                           cAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTg                                                                                                          <  1:596887/149‑1 (MQ=255)
                                           cAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGCCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACTTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTg                                                                                                          >  1:423899/1‑149 (MQ=255)
                                            aaGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGc                                                                                                         >  2:669113/1‑149 (MQ=255)
                                                  tttGTAGAACTGATATGTCTATAGTCTGATTAGACGAACCGCCTCTTCTTAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAAc                                                                                                   <  1:208039/149‑1 (MQ=255)
                                                                  gTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGTGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGAtata                                                                                   >  2:587734/1‑149 (MQ=255)
                                                                  gTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGAtata                                                                                   >  2:535726/1‑149 (MQ=255)
                                                                   tCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCGTCATTACTCAAGGCCGGATGCGGCGTGAGGGACTTTTCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAATTCATTTTTATAGTTGAAAGAACGCTATTTTCAGATTTaa                                                                                  >  2:403690/1‑149 (MQ=255)
                                                                      ataGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCGACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAAtt                                                                               <  1:100385/149‑1 (MQ=255)
                                                                          tCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGat                                                                           >  1:210807/1‑149 (MQ=255)
                                                                                  gACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTaa                                                                   >  2:613083/1‑149 (MQ=255)
                                                                                       aCCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAg                                                              >  2:232161/1‑149 (MQ=255)
                                                                                            ctctTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCaaaa                                                         <  1:669113/149‑1 (MQ=255)
                                                                                             tcttctCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAag                                                        >  1:509643/1‑149 (MQ=255)
                                                                                               ttctCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAagga                                                      <  1:473019/149‑1 (MQ=255)
                                                                                                      gCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGat                                               <  1:613083/149‑1 (MQ=255)
                                                                                                                     gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTaa                                                               >  2:550033/1‑118 (MQ=38)
                                                                                                                           tGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATCTCTAATTAAGCAAAAGGAGTCTGATATGAGCCAtcatcaagctgcg                          >  2:360097/1‑142 (MQ=255)
                                                                                                                               gcgTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATATGAGCCATCATCACGAAGGGtgtt                      <  1:637316/149‑1 (MQ=255)
                                                                                                                               gcgTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATATGAGCCATCATCACGAAGGGtgtt                      <  2:71799/149‑1 (MQ=255)
                                                                                                                                    aaCGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATATGAGCCATCATCACGAAGGGTGTTGTaaa                 >  2:236240/1‑149 (MQ=255)
                                                                                                                                         cTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATATGAGCCATCATCACGAAGGGTGTTGTaaa                 >  1:636399/1‑144 (MQ=255)
                                                                                                                                         cTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATATGAGCCATCATCACGAAGGGTGTTGTaaa                 <  2:636399/144‑1 (MQ=255)
                                                                                                                                           tATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATCTGCATCATCATCACGAAGGGTGTTGTAAACATGAAg          <  1:535726/149‑1 (MQ=255)
                                                                                                                                                ggCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATAGCTAATTAAGCAAAAGGAGGCTGATATGAGCCATCATCACGAAGGGTGTTGTAAACATGAAGgccag     <  1:383088/149‑1 (MQ=255)
                                                                                                                                                   cTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATATCAGCCATCATCACGAAGGGTGTTGTAAGCATAAAGgccggcca  >  2:93597/1‑149 (MQ=255)
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AATAAAACTCGCAAATGATAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATATGAGCCATCATCACGAAGGGTGTTGTAAACATGAAGGCCAGCCA  >  NC_000913_3_hsa_tpiA/3216528‑3216823

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.