New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 227052	25 (0.540)	8 (0.180)	7/268	4.8	25.1%	noncoding (1294/2904 nt)	rrlH	23S ribosomal RNA of rrnH operon
	?	NC_000913_3_hsa_tpiA	2727910 =	NA (NA)					noncoding (1275/2904 nt)	rrlG	23S ribosomal RNA of rrnG operon
Rejected: Coverage evenness skew score above cutoff.

ATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTG‑TAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTC  >  NC_000913_3_hsa_tpiA/226905‑227134                                                                                                                                                     |                                                                                   aTGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTG‑TAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTc                                                                                   >  1:813899/1‑149 (MQ=38)        gAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTG‑TAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAGGCCCGCTCGCCGGaa                                                                            <  2:431895/149‑1 (MQ=255)        gAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTG‑TAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGaa                                                                            <  1:374297/149‑1 (MQ=38)             tGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTG‑TAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGNGAANAGCCCGCTCGCCGGAAGAACa                                                                       >  1:422595/1‑149 (MQ=37)              gCGGCCGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTG‑TAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCaa                                                                      <  1:544384/149‑1 (MQ=38)              cgggCAGCGACGGTTAGGCGTTGTTGGGTAGGGGAGCGTTCTG‑TAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCaa                                                                      <  1:49955/147‑1 (MQ=255)               tggCAGCAACGCTTATTCGTTGTTTGGTAGGGGAGCGTTATT‑TAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAg                                                                     <  1:744674/148‑1 (MQ=11)                 gCAGCGACGCTTATGCGTTGTTGGGCAGGCACG‑GTAGTGTTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGGGAAAAGCCCGCTCGCCGGAAGACCAAggg                                                                   >  1:404417/1‑149 (MQ=11)                  cAGCGACGCTTATGCGGTGTTGGGTAGGGGAGCGTTCTG‑TAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGt                                                                  <  1:208351/149‑1 (MQ=37)                    gCGAGGCTTATGCGTTGTTGGGTAGGGGAGCGGTCTG‑TAAGCCTGTGAAGGTTTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTc                                                                <  2:470871/149‑1 (MQ=255)                      gACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTG‑TAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGGGAAAAGCCCGCTCGCCGGAGGCCCAAGGATTcat                                                              >  2:290926/1‑147 (MQ=255)                                         gTAGGGGAGCGTTCTG‑TAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGc                                           >  1:631455/1‑149 (MQ=35)                                            ggggAGCGTTCTG‑TAAGGCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAgg                                        <  2:764623/149‑1 (MQ=25)                                                 gCGTTCTG‑TAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAg                                   <  1:84664/149‑1 (MQ=35)                                                    ttCTG‑TAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGCCATAAGTAACGATAAAGCGGGTGAAAAGCCGGCTGGCCGGAAGACCAAGGGATCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCg                                >  1:726281/1‑149 (MQ=255)                                                     tCTG‑TAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGa                               <  2:813899/149‑1 (MQ=35)                                                             gCCTGTGAAGGCGTACTGTGAGGTATGCTGAAGGTATCAGAAGTGCGACCGATCACATAAGAAACGAGAAAGCGGGTGAAAAGCCCACACGCCGCAAGACCAAGAGTTCCTGTCCAACGTTAATCGGGTCAGCGTGAGTAGACCCCCaa                        >  2:343118/1‑149 (MQ=11)                                                                   gAAGGTGTACTGTGAAGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGATGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTACGGCGAg                  >  2:671035/1‑149 (MQ=255)                                                                      ggtggtcTGTGAGGTATGCTGGTGGTATCAGAAGGGCGAATGCTGACATAATTAACGATAAAGACGGTTAAAAGGCCGATAGCCAGAAGATCAAGCGTTCCTTCCCAACTTTAATCTGGGTAGGGTGAGTCGACCCCTAAGGCGCGGcc               <  2:238092/143‑1 (MQ=2)                                                                       gtgtACTGGGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCg              <  2:12508/149‑1 (MQ=21)                                                                         gtACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAGAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACACCTAAGGCGAGGCCGaa            >  1:569156/1‑149 (MQ=21)                                                                           aCTGTGAGGTAGGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGGAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAg          <  1:485729/149‑1 (MQ=17)                                                                             tgtgAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGc        >  2:325358/1‑149 (MQ=32)                                                                                 aGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAg    >  1:85850/1‑149 (MQ=32)                                                                                   gTATGCTGGAGGTATCAGAAGTGCTAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTc  >  1:707844/1‑149 (MQ=14)                                                                                                                                                     |                                                                                   ATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTG‑TAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTC  >  NC_000913_3_hsa_tpiA/226905‑227134

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.