New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	349594 =	NA (NA)	3 (0.100) +GATGCGACGCTATGCGTCTTATCCGACCTACAGTTCAGTGCACCCCGT	3/184	5.0	8.5%	intergenic (+22/‑418)	prpB/prpC	2‑methylisocitrate lyase/2‑methylcitrate synthase
	?	NC_000913_3_hsa_tpiA	349882 =	49 (1.060)					noncoding (278/365 nt)	REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences	REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGACACAACGAT  >  NC_000913_3_hsa_tpiA/349741‑350028                                                                                                                                              |                                                                                                                                                   aCTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCCATGCCTGa                                                                                                                                             >  2:774554/1‑149 (MQ=38)  cTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGAt                                                                                                                                            <  1:741073/149‑1 (MQ=38)     aaCTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATtcg                                                                                                                                         >  2:418434/1‑149 (MQ=255)                          cATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATCCGCCGCTGGCGCGACTAATCAgt                                                                                                                    >  2:652513/1‑148 (MQ=255)                                       ccGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATGGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGtgca                                                                                                       <  2:370723/149‑3 (MQ=11)                                        cGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGtgaac                                                                                                      >  1:376250/1‑149 (MQ=35)                                            aaCCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGtgaactgaa                                                                                                  <  2:756410/149‑1 (MQ=35)                                             aCCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGtgaactgaac                                                                                                 <  2:728311/149‑1 (MQ=35)                                              ccGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATTCCAGATCCGCAGCGTACGCGACTTATCAGCCCTACGGGGTgaactgtact                                                                                                >  2:379930/1‑149 (MQ=11)                                                gATGCCCGATGCGCCGCTGACGCGACTTACCAGGCCTACGGGGCGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGt                                                                                              <  2:453943/149‑1 (MQ=255)                                                 aTGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTa                                                                                             >  1:680487/1‑149 (MQ=35)                                                  tGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAg                                                                                            <  1:473371/149‑1 (MQ=35)                                                     gtGATGCGGCTCTGACGGGGATGCTCAGGACCACGGTGTGCAGTGAACTGTAGGTCGGATAAGACGCAGAGCGTCGCATTCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTc                                                                                         <  2:243548/148‑1 (MQ=11)                                                     cTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTc                                                                                         >  1:47808/1‑149 (MQ=35)                                                                        aCTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGTc                                                                      >  1:811783/1‑149 (MQ=32)                                                                         cTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGtgaact                                                                                                     <  1:87330/117‑1 (MQ=32)                                                                            aacagctcTACGGGGTGCAACGAACTGTAGGTACGAGAAGACCCACAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCAt                                                                  <  2:9465/142‑1 (MQ=11)                                                                               aGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGAt                                                                                     <  1:711180/127‑1 (MQ=33)                                                                               aGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGCGAACTGAACTGTAGGCCGGATAAGACGCATAGCGTCCCATCCg                                                               >  2:628586/1‑149 (MQ=12)                                                                               aGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGAt                                                                                     >  2:711180/1‑127 (MQ=9)                                                                                ggCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGa                                                              <  1:796968/149‑1 (MQ=32)                                                                                            gcgcTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATTCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACAATCTCGa                                                  <  2:597076/146‑1 (MQ=255)                                                                                            gCACTGACCTGTAGGCCCGATAAGCCGCATACCGTCGCATGCGATAACCGACGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACAATCTCGa                                                  <  1:253864/149‑1 (MQ=14)                                                                                                tGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGGTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGAGGGATGAGACGGATAGCGTCGCATCCGACAACGATCTAGACCCt                                              >  1:360259/1‑149 (MQ=11)                                                                                                 gAACTCTAGGTCGGATAAGACGCTTCGCGTCGCATCCGTCAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACAATCTCGACCCTa                                             <  2:82899/149‑1 (MQ=255)                                                                                                     tGTAGGTCGGATAAGACGCGTCTGGTCTCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACaaa                                         <  1:557501/149‑1 (MQ=14)                                                                                                      gTATGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAAt                                        <  1:379930/149‑1 (MQ=255)                                                                                                      gTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAAt                                        <  2:376250/149‑1 (MQ=255)                                                                                                       tAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATg                                       >  2:220494/1‑149 (MQ=255)                                                                                                        aGGTCGGATAAGACGCAGAGCGTCGCATCCGACAACCGATGCCTGATGCGCTGCTGACGCGACTTATCAGGCCTACGGGGTGACCTGAACTGTAGGTCGGATAAGAGTCATAGCGTTGCAGCCGACAACAATCTCGACCCTACAAATGa                                      <  2:772397/149‑1 (MQ=17)                                                                                                          gTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGCCGCCTCCGACAACAATCTCGACCCTACAAATGATa                                    >  2:467713/1‑149 (MQ=255)                                                                                                           tCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGAATCCGACAACAATATCGACCCTACAAATGATaa                                   >  2:573712/1‑149 (MQ=255)                                                                                                             ggATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGc                                                                              <  1:185323/104‑1 (MQ=33)                                                                                                              gATAAGCCGCATAGCGTCGCATCCGACAACCGATGCCTGATGGGTTGGTTAGGTGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACaa                                <  2:580543/149‑1 (MQ=17)                                                                                                              gATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGCATAAGACGCATCGCGTCGCATCCGAAAACAATCTCGACCCTACAAATGATAACaa                                >  1:68025/1‑149 (MQ=255)                                                                                                                    aCGCATAGCGTCGCATTCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTTAACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGa                          <  2:164661/149‑1 (MQ=255)                                                                                                                    aCGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGa                          <  2:47808/149‑1 (MQ=255)                                                                                                                       taccgCGTCGCCGCCGACCAGCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGCACCGTACGTCACTTAAGAGACATAGCGTAGAACGCAACAACAATCTCGACCCTTCAAATGATAACAATGACGAGGa                       <  2:381127/145‑1 (MQ=12)                                                                                                                           gCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGacaac                   <  2:243390/149‑1 (MQ=255)                                                                                                                               cgtaTCCGACAACCGATGCCTGATGCGCCGGTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATTACAATGACGAGGACAACATGa               <  2:196352/146‑1 (MQ=255)                                                                                                                                gCATCCGACAACCGATGCCTGATGCCCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGGCGGATAAGACGCATAGCGGCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAg              <  1:660745/149‑1 (MQ=255)                                                                                                                                 cATCCGACAACCGATGCCTGATGCGCCGCTGGCGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGc             <  1:285282/149‑1 (MQ=255)                                                                                                                                  aTCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCg            >  2:9219/1‑149 (MQ=255)                                                                                                                                   tCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGa           <  2:680487/149‑1 (MQ=255)                                                                                                                                     cGAAAAACGATGCCTGATGCGCCGCTGCCGCTACTTAGCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGaca         <  1:145390/149‑1 (MQ=21)                                                                                                                                         aaCCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGACACAAc     <  2:164894/149‑1 (MQ=255)                                                                                                                                            cGATGCCTGATTCGCCACTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGAAGAGGACAACAAGAGCGACACAACGac  >  2:141767/1‑148 (MQ=255)                                                                                                                                             gATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGACACAACGAt  <  1:791183/148‑1 (MQ=255)                                                                                                                                             gATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGACACAACGAt  >  2:791183/1‑148 (MQ=255)                                                                                                                                              |                                                                                                                                                   ACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACAATCTCGACCCTACAAATGATAACAATGACGAGGACAACATGAGCGACACAACGAT  >  NC_000913_3_hsa_tpiA/349741‑350028

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.