Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913_3_hsa_tpiA 3,815,810 Δ1 bp intergenic (‑42/+24) pyrE ← / ← rph orotate phosphoribosyltransferase/ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913_3_hsa_tpiA3,815,8090G.96.5% 244.7 / 4.3 59intergenic (‑41/+25)pyrE/rphorotate phosphoribosyltransferase/ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
Reads supporting (aligned to +/- strand):  ref base G (1/1);  new base . (23/32);  total (24/35)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCA  >  NC_000913_3_hsa_tpiA/3815662‑3815951
                                                                                                                                                   |                                                                                                                                              
ttGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAgg                                                                                                                                               >  1:1139772/1‑149 (MQ=255)
  gaagaaATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACGAAACAAAgcgc                                                                                                                                             >  2:1002461/1‑146 (MQ=255)
  gaagaaATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAgcga                                                                                                                                             >  1:49645/1‑146 (MQ=255)
     gaaATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGACtc                                                                                                                                         >  2:570259/1‑149 (MQ=255)
           ggggCTTTTGACGCCGTATTTCAGCGTAAACTCGCCAAACTTGAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGt                                                                                                                                   <  2:1125479/149‑1 (MQ=255)
            gggCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTACGCGCAAATTCACTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTTTACAGACAAAAAAAAGGCAGCTCATCAGt                                                                                                                                   >  2:979342/1‑149 (MQ=255)
            gggCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACATGCTTGCTGAACGCAAATGCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACCTTTCGACAGACAAAAAAAAGCGCCTCATCAGTc                                                                                                                                  >  1:242956/1‑149 (MQ=255)
            ggacTTTTGCCACCTGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTTGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACATACAAAAAAAAGCGACTCATCAGTc                                                                                                                                  <  2:936499/146‑1 (MQ=255)
                        ccGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATc                                                                                                                      >  1:1181582/1‑149 (MQ=255)
                        aaggATTTAAGGGTAAGCTCGCCAAACTTTGACACTTGCTTGGTAAGGGCAAATTCAATAAGCTGGCGCTGTTATGGGTTCATGCCTTCGTTCCTCATCTTACTTTTAAAAAAAAAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATc                                                                                                                      <  2:310409/147‑1 (MQ=255)
                         cGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCa                                                                                                                     <  1:504681/149‑1 (MQ=255)
                             tttCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGttt                                                                                                                 <  1:570259/149‑1 (MQ=255)
                             ttgcAGTGTAACTTCGCCAAACTTTAACCCCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGttt                                                                                                                 <  1:28059/146‑1 (MQ=255)
                                   cGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGTGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAACAATCACTTTGCCaca                                                                                                           >  2:272019/1‑147 (MQ=255)
                                      aaaCTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAgc                                                                                                                                               >  2:1105437/1‑110 (MQ=255)
                                      aaaCTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAgc                                                                                                                                               <  1:1105437/111‑2 (MQ=255)
                                             ccAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCt                                                                                                 <  1:151807/149‑1 (MQ=255)
                                               acaCTTGAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCAGAAAAAGGTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGc                                                                                               <  1:972547/147‑1 (MQ=255)
                                               aaaCTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAgcga                                                                                                                                             <  1:407920/104‑4 (MQ=255)
                                               aaaCTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAgcga                                                                                                                                             >  2:407920/1‑101 (MQ=255)
                                               aaaCTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCa                                                                                                             <  1:301578/135‑1 (MQ=255)
                                               aaaCTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCa                                                                                                             >  2:301578/1‑135 (MQ=255)
                                               aaaCTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCttc                                                                                               >  1:472284/1‑147 (MQ=255)
                                               aaaCTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGc                                                                                               >  2:257115/1‑149 (MQ=255)
                                                   tttAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCg                                                                                           >  1:798032/1‑149 (MQ=255)
                                                          ccTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACaa                                                                                     <  1:927722/149‑1 (MQ=255)
                                                          ccTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCa                                                                                                                     >  1:124170/1‑116 (MQ=255)
                                                          ccTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCa                                                                                                                     <  2:124170/116‑1 (MQ=255)
                                                           cTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGCCGCtgccaag                                                                                   >  1:315990/1‑143 (MQ=255)
                                                                   tAAGCGTAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTGCTGCGTCGATAAAATGgattcggt                                                                           >  2:641371/1‑147 (MQ=255)
                                                                            agtCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGTCTTATCAGTCGTCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCgg                                                                  <  2:762203/147‑1 (MQ=255)
                                                                            aTTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCTGCAGCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCgg                                                                  <  1:967089/149‑1 (MQ=255)
                                                                             ttCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGTATTCGATTCCCCTCggg                                                                 >  1:1190086/1‑149 (MQ=255)
                                                                                 aTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCag                                                             >  1:692215/1‑149 (MQ=255)
                                                                                     aCTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGcc                                                         <  1:837382/149‑1 (MQ=255)
                                                                                     aCTGGCGCTCACATGGTTTCATGCCTCCGCTCCTCATCTTACTTTTCTACCGACAAAAAAAAGCGCCTCATCAGTCGCCTTAAGAACCAGTTTTCTAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGcc                                                         <  1:1178157/149‑1 (MQ=255)
                                                                                            cTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCACCAATTTTTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGa                                                  <  1:865793/149‑1 (MQ=255)
                                                                                            atGATATGGTGTCACTCTCTAGCTCCTTTGCTTACTTTGCTACAGACAAAAAAAAGCGACGCATCAGCCGCCTTAAAAACCAGTTTGTCAGCGCCGCCTTCTGCGTCGCTACAACCAAACTGGTGCCCTTCGGGCCAGAGCCAACAAGa                                                  <  2:271071/148‑1 (MQ=255)
                                                                                             tGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGAt                                                 >  2:1190792/1‑149 (MQ=255)
                                                                                             tGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGAt                                                 <  1:1190792/149‑1 (MQ=255)
                                                                                             gatcatGGTTTCATGCCTTCGCTCCTCATCCTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGGCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGAt                                                 <  2:127093/145‑1 (MQ=255)
                                                                                                tatGGTATCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAA‑‑GCGACTCATCAGTCCCCTTAAAAATCAGTTTCGCAGCGCCGCCTTCTGCGTCTCTACAATGGATTCGATTCCCATCGGGCCAGAGCCAACAAGATGAGt                                             <  1:1123491/149‑1 (MQ=255)
                                                                                                 atGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGt                                             <  1:723952/149‑1 (MQ=255)
                                                                                                 atGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGt                                             >  1:565962/1‑149 (MQ=255)
                                                                                                      ttCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGctc                                        <  1:968837/149‑1 (MQ=255)
                                                                                                      ttCATGCCTTCGCCCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGACAACTATAAACCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGctc                                        <  1:288263/149‑1 (MQ=255)
                                                                                                       tCATGCCTTCGTTCCTCATCTTACTTTTCTACCGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGctct                                       <  2:926654/149‑1 (MQ=255)
                                                                                                        cATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCtt                                      >  1:1160483/1‑149 (MQ=255)
                                                                                                         aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCCACAAGATGAGTAGCTCTTc                                     >  1:831541/1‑149 (MQ=255)
                                                                                                             cgtctctcctcATCTTCCTTTTCTACAGATAAAAAAATGCGTCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATgg                                 <  2:1151919/144‑1 (MQ=255)
                                                                                                             cTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATgg                                 <  1:577474/149‑1 (MQ=255)
                                                                                                                  ctcctcATTTTACTTTTCGACATACAAGAAAAAGCGACTCATCTGTCGTATTAAAAACCAGTCAGCCTTTGCCGCTTTCTGCGTTGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGaa                            <  2:137462/149‑1 (MQ=255)
                                                                                                                  ctcctcATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGaa                            <  2:49645/149‑1 (MQ=255)
                                                                                                                  ctcctcATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGaa                            <  1:257115/149‑1 (MQ=255)
                                                                                                                   tcctcATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAAc                           <  2:1160483/149‑1 (MQ=255)
                                                                                                                    cctcATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACg                          >  2:377254/1‑149 (MQ=255)
                                                                                                                       cATCTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTAGCGGAAGAAAAAACAAGATGAGTAGCTCTTCATGGGTGAACGGCt                       >  1:545462/1‑149 (MQ=255)
                                                                                                                          cTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGCAGCACTTCATGGGTGACCGGCTCGc                    >  2:581010/1‑149 (MQ=255)
                                                                                                                          cTTACTTTTCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCACCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGc                    >  1:1186383/1‑149 (MQ=255)
                                                                                                                            tACTTTTCAACAGAGAAAAAAAAGCGACTCATAACCAGCATTAAACATCGGTATCCCAACGGCGCCTTCCCCGTCGCTACAATGGATCCGGGTCCCCGGGGGTGAGAGCGAGCAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCt                  <  2:1223987/149‑1 (MQ=255)
                                                                                                                              cctttCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTc                <  1:846622/147‑1 (MQ=255)
                                                                                                                               ttttCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGACCGGCTCGCCTTCt               >  2:289830/1‑149 (MQ=255)
                                                                                                                               ttttCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCt               <  2:692215/149‑1 (MQ=255)
                                                                                                                               ttttCTACAGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCACCAGCAGCAGCAGCAACAAGATGAGTAGCACTTCATGGGTGAACGGCACGCCTTCt               >  1:599014/1‑149 (MQ=255)
                                                                                                                                       aGACAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccc       <  2:1159080/149‑1 (MQ=255)
                                                                                                                                            aaaaaaaaGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGc   >  2:262375/1‑149 (MQ=255)
                                                                                                                                             aaaaaaAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCa  <  1:581010/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                              
TTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCA  >  NC_000913_3_hsa_tpiA/3815662‑3815951

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: