New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913_3_hsa_tpiA | 259015 = | NA (NA) | 5 (0.070) | 5/268 | 9.4 | NA | intergenic (+9/+30) | crl/phoE | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/outer membrane phosphoporin protein E |
? | NC_000913_3_hsa_tpiA | 259038 = | NA (NA) | intergenic (+32/+7) | crl/phoE | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/outer membrane phosphoporin protein E | |||||
Rejected: Coverage evenness skew score above cutoff. |
AGACACTGAAGTGGTTGAACGACTGGAGCACACCCTGCGTGAGTTTCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGTTATCGCTATCCAGTTGGTTGATTTTATAATCAACAAACGCTGACATATTTTTGT > NC_000913_3_hsa_tpiA/258868‑259157 | aGACACTGAAGTGGTTGAACGACTGGAGCACACCCTGCGTGAGTTTCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGTTGAAGTTAACGGCGTGAGTGAAAtgtg > 1:965436/1‑149 (MQ=255) aGACACTGAAGTGGTTGAACGACTGGAGCACACCCTGCGTGAGTTTCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAAtgtg > 1:910414/1‑149 (MQ=255) cacTGAAGTGGTTGAACGACTGGAGCACACCCTGCGTGAGTTTCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCg < 2:118665/149‑1 (MQ=255) cacGGAAGTGGTTGAACGACTGGAGCACACCCTGCGTGAGTTTCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCg < 2:639687/149‑1 (MQ=255) tGAAGTGGTTGAACGACTGGAGCACACCCTGCGTGAGTTTCACGCGCAGCTGAGAGCACGGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACAGCGTGAGTGAAATGTGCCGCAt > 1:557533/1‑149 (MQ=255) gAAGTGGTTGAACGACTGGAGCACACCCTGCGTGAGTTTCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATg > 1:777398/1‑149 (MQ=255) gAAGTGGTTGAACGACTGGAGCACACCCTGCGTGAGTTTCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATg > 1:318103/1‑149 (MQ=255) gTGGTTGAACGACTGGAGCACACCCTGCGTGAGTTTCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGACGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑t < 2:922963/149‑1 (MQ=255) gTGGTTGAACGACTGGAGCACACACTGAGTATGGTTCACGAGAAGCTGCGTGAACTGATGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTTACGAGCCGATGAAGTTAACGGCGTCAGTGCATTGTGCAGACTGCA‑t > 2:585528/1‑149 (MQ=255) tGGTTGAACGACTGGAGAACACCCTGCGTGAGTTTCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑Tc < 1:52155/149‑1 (MQ=255) gTTGAACGACTGGAGCACACCCTGCGTGAGTTTCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑Tcac > 1:3621/1‑149 (MQ=255) gAACGACTGGAGCACACCCTGCGTGAGTTTCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATc > 2:299264/1‑149 (MQ=255) cTGCGTGAGTTTCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTaaaa < 2:477496/149‑1 (MQ=255) gCGTGAGTTTCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCATGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACt < 2:426777/149‑1 (MQ=255) gggAGTTCCACGAGAAGCGTCGTTAACTGCTGACGACGCTGAATCTGAAGCTGGACCCGGCGGATGATTTTCGTCACGTGCAGGTGACGTTAACGTACTGAGTGAAATGGGGCGGACGGA‑TCACATGCGGCAATATTCATTAAAACTGa < 2:247828/147‑1 (MQ=255) tCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAACTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCa > 2:185909/1‑149 (MQ=255) aCGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATg < 1:1046099/149‑1 (MQ=255) aCGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATg < 1:1152121/149‑1 (MQ=255) gagaAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGcc < 2:777398/149‑1 (MQ=255) gCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACcg > 1:672416/1‑149 (MQ=255) gAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCC‑TCCCATCCGGCAATATTCATTATAACTTATACGTCCTGCCACCAGCGGCAat > 2:240317/1‑149 (MQ=255) gAACTGCTGACGACGCTGAATCGGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCACTAAAACTGATACGTCATGCCAACCGCGACAat < 1:696930/149‑1 (MQ=255) aaCTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATCCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAata > 2:997009/1‑149 (MQ=255) tgctgACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCCAGCAAACCGCGACAATatca > 1:311505/1‑149 (MQ=255) ctgACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATatcatc > 1:269505/1‑149 (MQ=255) ctgACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCAGGTCGGT‑CCGCGGCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATatcatc > 1:1218512/1‑149 (MQ=255) cgtccgacgCTGAATCTGAATCTGGAACTGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATatcatc < 2:112124/145‑1 (MQ=255) atgAGGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGGCAACCGCGACAATatcatc > 1:1178727/2‑149 (MQ=255) tGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACCTCCCGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAata < 1:667492/149‑1 (MQ=255) tGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAata < 1:335292/149‑1 (MQ=255) aaTCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATAtt > 2:1016631/1‑149 (MQ=255) tCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTAATGCCAACCCCGACCATATCATCATTATTATTTTTCa > 2:454320/1‑149 (MQ=255) tGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCC‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATAATCATTATTAATATTCAAt > 2:162132/1‑149 (MQ=255) aaGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAAttt < 1:477781/149‑1 (MQ=255) aGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCAACAATATCATCATTATTAATATTCAATTTg > 2:336181/1‑149 (MQ=255) cTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGtt > 2:910351/1‑149 (MQ=255) gAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGCTACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGTTATc < 1:670022/149‑1 (MQ=255) aCCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGTTATCGc > 1:978919/1‑149 (MQ=255) aCCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGTTATCGc > 1:761191/1‑149 (MQ=255) ccGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAAATGATTGCACATTCTTACGGCGACAAAACAATACTTATTAGAATTCAATTTGtgttagct > 1:348587/1‑142 (MQ=255) ggcggATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGTTATCGCTAt < 2:3621/149‑1 (MQ=255) gcggATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGCCAATATCATCATTATTAATATTAAATTTGTTATCgatcta > 2:624166/1‑144 (MQ=255) ggATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGACGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCCTTCTTAATCTTCAATTTGTTACAGCTATCCa > 2:1136130/1‑149 (MQ=255) ttttCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGTTATCGCTATCCCgttggt > 2:906923/1‑149 (MQ=255) ttttAGTGACGACCCGGTGAAGTTCACTGGCTGAGTTAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGTTATCGCTATCCAgttggt < 1:282721/149‑1 (MQ=255) tCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGTAATCGCTATCCAGTTGGTTGa > 1:1141782/1‑149 (MQ=255) tGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGTTATCGCTATCCAGTTGGTTGAttt > 2:741539/1‑149 (MQ=255) cGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGTTATCGCTATCCAGTTGTTTGAttttct > 1:1191505/1‑147 (MQ=255) ccGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGTTATCGCTATCCAGTTGGTTGATTTTATAATc < 1:910351/149‑1 (MQ=255) ggTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGTTATCGCTATCCAGTTGGTTGATTTTATAATcaa < 1:624166/149‑1 (MQ=255) gagAAGTTAACGGCGTGAGTGAAATGTGCCGCATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGTTATCGCTATCCAGTTGGTTGATTTTATAATcaac < 1:647505/147‑1 (MQ=255) gTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCACTCA‑AAGGTGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGTTATCGCTATCCAGTTGGTTGATTATAAAATcaac < 1:546540/149‑1 (MQ=255) gTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGTTATCGCTATCCAGTTGGTTGATTTTATAATcaac > 1:687230/1‑149 (MQ=255) gTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGTTATCGCTATCCAGTTGGTTGATTTTATAATcaa > 1:176497/1‑148 (MQ=255) gTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGTTATCGCTATCCAGTTGGTTGATTTTATAATcaa < 2:176497/148‑1 (MQ=255) aGTTAACGGCGTGAGTGAAATGTGCTGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGTTATCGCTATCCAGTTGGTTGATTTTATAATCAACAAAc < 1:466183/149‑1 (MQ=255) gTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGTTATCGCTATCCACTTGGTTGATTTTATAATCAACAAACg > 2:710906/1‑149 (MQ=255) ttAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCCATTTCCAGGAAAACTGATAAGGCGTGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGTTATCGCTATCCAGTTGGTTGATTTTATAATCAACAAACGc > 1:1223968/1‑149 (MQ=255) cGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGTTATCGCTATCCAGTTGGTTGATTTTATAATCAACAAACGCTGAcctt > 2:721023/1‑146 (MQ=255) cGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGTTATCGCTATCCAGTTGGTTGATTTTATAATCAACAAACGCTGACata < 1:1032190/149‑1 (MQ=255) gaAATGTGCCGGATTCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGTTATCGCTATCCAGTTGGTTGATTTTATAATCAACAAACGCTGACATATTTttgt < 1:659959/149‑1 (MQ=255) | AGACACTGAAGTGGTTGAACGACTGGAGCACACCCTGCGTGAGTTTCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCA‑TCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGTTATCGCTATCCAGTTGGTTGATTTTATAATCAACAAACGCTGACATATTTTTGT > NC_000913_3_hsa_tpiA/258868‑259157 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |