Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913_3_hsa_tpiA 1,978,503 Δ776 bp insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913_3_hsa_tpiA 1978503–1979270 1979278 9–776 71 [0] [0] 72 insB1–insA insB1,insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 19785020 (0.000)69 (1.020) 57/270 0.2 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913_3_hsa_tpiA 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

AAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATT  >  NC_000913_3_hsa_tpiA/1978357‑1978650
                                                                                                                                                 |                                                                                                                                                    
aaaCGGGTCTTTCCTCTTATCTAAGATTTCTCCTAAATCGACGCAACTGTTCCCTTCACTACACGCACATACAACGGAGGGGGGCTGCGATTCTCAATAATGCGTGATGCAGAGCACACACAACTCTCTATTACTTAACATAAATGtat                                                                                                                                                   <  2:948829‑M1/149‑4 (MQ=255)
 aaTGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtata                                                                                                                                                  <  1:791877‑M1/149‑5 (MQ=255)
    gggTCTTTACATTTATCTAAGATTTTTCCTAAATCGAAGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagt                                                                                                                                               <  2:341151‑M1/149‑8 (MQ=255)
     ggTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATACCACAAAACACTCAATTCCTGAACATAAATGtataagtc                                                                                                                                              >  2:900279‑M1/1‑141 (MQ=255)
      gTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGCGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtca                                                                                                                                             >  1:770298‑M1/1‑140 (MQ=255)
      gTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtca                                                                                                                                             <  2:415366‑M1/149‑10 (MQ=255)
            acacTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATACCACAAAACACACAGTTACTTAACATAAATGtataagtcatacttt                                                                                                                                       >  2:883288‑M1/1‑134 (MQ=255)
              acTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCCCACAAAACACTCAATTACTTAACATAAATTtataagtaaaacttttg                                                                                                                                     >  1:13303‑M1/1‑132 (MQ=255)
              acTTATCTAAGATTTTTCCCAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTCTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttg                                                                                                                                     >  1:270712‑M1/1‑132 (MQ=255)
              aactatcTAAGATTTTGCCTAAATCGAAGCAACTGTACACGTCACTACACGCACATACAACGGAGGGGCGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttg                                                                                                                                     <  2:545005‑M1/146‑18 (MQ=255)
                ttATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtt                                                                                                                                   >  1:1030062‑M1/1‑130 (MQ=255)
                ttATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtt                                                                                                                                   >  2:979232‑M1/1‑130 (MQ=255)
                  aTCTAAGTGTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttt                                                                                                                                 <  1:690604‑M1/149‑22 (MQ=255)
                  aTCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttt                                                                                                                                 <  1:766656‑M1/149‑22 (MQ=255)
                   tCTAAGATTTTTCCTAAATCGACGTAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttg                                                                                                                                <  2:901891‑M1/149‑23 (MQ=255)
                   tCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttg                                                                                                                                <  1:502‑M1/149‑23 (MQ=255)
                    cTAAGATTTTTCCTAAATCGACGCCACTGTACTCGTCGCTACACGCACATACTACGGAGGGGGGCTGCGAATTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATTtatacgtcatactttcgttttgg                                                                                                                               <  1:1146662‑M1/149‑24 (MQ=255)
                    cTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                               <  2:1030062‑M1/149‑24 (MQ=255)
                    cTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCACATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                               <  1:979232‑M1/149‑24 (MQ=255)
                    cTAAGATTTTTCCTAAAGCGACGCAACTGTACTCGTCACTACGCGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                               <  1:989214‑M1/149‑24 (MQ=255)
                     tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggg                                                                                                                              >  2:678706‑M1/1‑125 (MQ=255)
                            tctccTAAATCGACGCAACGGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtattt                                                                                                                       <  2:1164505‑M1/147‑32 (MQ=255)
                                cTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat                                                                                                                   >  1:788150‑M1/1‑114 (MQ=255)
                                  gaatCGACGCAATTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCTATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatct                                                                                                                 <  2:477259‑M1/148‑38 (MQ=255)
                                          gCAACTGTACTCGTCACTACACGCATATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                                                                         <  1:999660‑M1/149‑46 (MQ=255)
                                           cacctgtACGCGTCATTCCACGCACATACATCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaag                                                                                                        <  2:448515‑M1/146‑47 (MQ=255)
                                             aCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATACAGCGTGATGCTGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtt                                                                                                      <  1:416150‑M1/149‑49 (MQ=255)
                                                    tCGTCACTACACGCACATACAACGGAGGGGGGCTGAGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtattttcatctcttaaaaagtttttcgtt                                                                                               >  2:145974‑M1/1‑94 (MQ=255)
                                                      gTCACTACACGCACATACAACGGCGGGGGGCTGCGCTTTTCAATAATGCGTGATGCAGATCACACAAAACACTCCATTACTTAACATAACTGtataagtcatactttttttttgtgtgtattccaatctgttaacaagtttttctctac                                                                                             >  2:254016‑M1/1‑92 (MQ=255)
                                                      gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttctctcc                                                                                             >  2:389372‑M1/1‑92 (MQ=255)
                                                        ccctaCACGCACAGACAACGGAGGGCGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgc                                                                                           <  1:286638‑M1/147‑60 (MQ=255)
                                                        cACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgc                                                                                           <  2:788150‑M1/149‑60 (MQ=255)
                                                        cACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGACGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgc                                                                                           <  1:313567‑M1/149‑60 (MQ=255)
                                                              acGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaa                                                                                     >  2:1184118‑M1/1‑84 (MQ=255)
                                                                gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagc                                                                                   >  1:1113612‑M1/1‑82 (MQ=255)
                                                                 cacaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCCCACAAAAGACTCAATTACTTAACATAAATGtataggtcatagttttgttttggtggtatttcaatctgttaaaaagtttttcgctacgccacccagca                                                                                  >  2:384159‑M1/1‑81 (MQ=255)
                                                                     tACAACGGATGGAGGCTGCTATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttttggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaa                                                                              <  1:679954‑M1/149‑73 (MQ=255)
                                                                          cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaa                                                                         <  2:216485‑M1/149‑78 (MQ=255)
                                                                            gAGGGGGGCTGCGATTTTCAATGATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaaca                                                                       <  2:748223‑M1/149‑80 (MQ=255)
                                                                             aGGGGGGCTGCGATTTTAAATAATGCGTGATGCAGATGACACAAAACGTTCAATTACTTAACATAAATGtatatgtcatacttttgttttggttgtatgtcaatctgttaaaaagtttttcgctacgctagcacgctaaaatacaagag                                                                      >  2:524013‑M1/1‑69 (MQ=255)
                                                                                  ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaata                                                                 <  1:866754‑M1/149‑86 (MQ=255)
                                                                                     tGCGATTTTCAATAATGCGTGATGCAGATCACACCAAACACTCAATTACTTAACATAAATGtataggtaatacttttgttctgggtgtatttcaatctgataaaaagtttttcgctacgctagcaagctaagctcacacagggaaaatc                                                              >  2:993496‑M1/1‑61 (MQ=255)
                                                                                        gATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtaatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaa                                                           <  2:134743‑M1/149‑92 (MQ=255)
                                                                                          ttttCAATAATGCGTGAGGCAGATCACACAAAGCACTCAATTACTTAACATAAATTtaaaagtcatacttttatgtggagtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat                                                         <  2:451542‑M1/149‑94 (MQ=255)
                                                                                           tttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatg                                                        <  1:990478‑M1/149‑95 (MQ=255)
                                                                                           tttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatg                                                        >  1:292513‑M1/1‑55 (MQ=255)
                                                                                            ttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg                                                       <  1:1053502‑M1/149‑96 (MQ=255)
                                                                                            ttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg                                                       >  2:914514‑M1/1‑54 (MQ=255)
                                                                                             tCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggg                                                      >  1:157759‑M1/1‑53 (MQ=255)
                                                                                               aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgct                                                                                               >  2:560668‑M1/1‑51 (MQ=255)
                                                                                               aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgct                                                                                               <  1:560668‑M1/106‑56 (MQ=255)
                                                                                                ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatg                                                   >  1:454109‑M1/1‑50 (MQ=255)
                                                                                                  aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgtt                                                 <  1:1088429‑M1/149‑102 (MQ=255)
                                                                                                       gTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctcgcaagcaaaaatgaaacaggaataaacgaaatgggatgttgcgca                                            >  1:862099‑M1/1‑43 (MQ=255)
                                                                                                        tGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagccagcaaaaatgaaacaggaataatggaaatgggatgttgcgcac                                           >  1:341559‑M1/1‑42 (MQ=255)
                                                                                                         gATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcagtctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatggtgcgcacc                                          >  1:234625‑M1/1‑41 (MQ=255)
                                                                                                             cAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggttgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtca                                      >  2:676772‑M1/1‑37 (MQ=255)
                                                                                                               gATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcgatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtaaaa                                    >  2:686857‑M1/1‑35 (MQ=255)
                                                                                                               gATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaggcaaaaatgaaacaggaacgatggtaatgggatgttgcgcacagtcaaa                                    <  2:270712‑M1/149‑115 (MQ=255)
                                                                                                                aTCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttccgcacagtcaaaa                                   >  2:156559‑M1/1‑34 (MQ=255)
                                                                                                                  cacacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaata                                 >  2:580601‑M1/1‑32 (MQ=255)
                                                                                                                  cacacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgaacagtcaaaata                                 >  2:459551‑M1/1‑32 (MQ=255)
                                                                                                                     acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatggaacaggaataatcgaaatgggatgttgcgcacagtcaaaataact                              >  2:1238527‑M1/1‑29 (MQ=255)
                                                                                                                     acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataact                              <  1:683651‑M1/149‑121 (MQ=255)
                                                                                                                              tCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaa                     >  2:295419‑M1/1‑20 (MQ=255)
                                                                                                                                aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacag                                                                      >  1:394366‑M1/1‑18 (MQ=255)
                                                                                                                                aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacag                                                                      <  2:394366‑M1/98‑81 (MQ=255)
                                                                                                                                aaTTACTTAACATAAATGtataagtcatacttttgatttgggtgtatttcaatctgttacaaagtttttcgctacgctagcaagcaaaagtgaaacaggaataatcgaaatgggatgttacgcgcagtcaaaataacgcacgctaaata                   >  1:587932‑M1/1‑18 (MQ=255)
                                                                                                                                  ttACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataat                 <  2:915050‑M1/149‑134 (MQ=255)
                                                                                                                                         acctaaaTGtataagtcatacttttgctttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgc          <  1:883288‑M1/146‑141 (MQ=255)
                                                                                                                                                 gtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatggaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaata  <  1:1238527‑M1/149‑149 (MQ=255)
                                                                                                                                                 |                                                                                                                                                    
AAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATT  >  NC_000913_3_hsa_tpiA/1978357‑1978650

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: