mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_tpiA | 4,296,042 | 0 | C | T | 22.5% | 200.5 / 61.1 | 112 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 53 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 1568904 = | 81 (1.180) | 7 (0.110) | 7/256 | 7.5 | 8.9% | intergenic (‑81/+50) | yddW/gadC | liprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter |
| ? | NC_000913_3_hsa_tpiA | 1568931 = | 69 (1.100) | intergenic (‑108/+23) | yddW/gadC | liprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2477002 = | 66 (0.970) | 8 (0.130) | 6/254 | 8.0 | 10.8% | coding (628/936 nt) | dsdC | dsd operon activator; autorepressor |
| ? | NC_000913_3_hsa_tpiA | 2477035 = | 72 (1.150) | coding (595/936 nt) | dsdC | dsd operon activator; autorepressor | |||||
| * | ? | NC_000913_3_hsa_tpiA | 225078 = | NA (NA) | 6 (0.090) | 6/264 | 8.2 | NA | noncoding (1308/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_tpiA | 225100 = | NA (NA) | noncoding (1330/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3962703 | NA (NA) | 6 (0.090) | 6/266 | 8.3 | NA | noncoding (4/36 nt) | REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913_3_hsa_tpiA | = 3962735 | NA (NA) | noncoding (36/36 nt) | REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3944978 | NA (NA) | 6 (0.090) | 6/266 | 8.3 | 28.2% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_hsa_tpiA | = 4038811 | 16 (0.230) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2727891 = | NA (NA) | 6 (0.090) | 6/266 | 8.3 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_hsa_tpiA | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 227052 | 50 (0.730) | 6 (0.090) | 6/266 | 8.3 | 11.1% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_tpiA | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | 9199 = | 58 (0.850) | 6 (0.100) | 5/256 | 8.6 | 10.8% | intergenic (+8/‑107) | talB/mog | transaldolase B/molybdochelatase incorporating molybdenum into molybdopterin |
| ? | NC_000913_3_hsa_tpiA | 9227 = | 46 (0.730) | intergenic (+36/‑79) | talB/mog | transaldolase B/molybdochelatase incorporating molybdenum into molybdopterin | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3776001 = | 74 (1.080) | 5 (0.080) | 5/260 | 8.7 | 6.5% | coding (430/588 nt) | mtlR | mannitol operon repressor |
| ? | NC_000913_3_hsa_tpiA | 3776026 = | 75 (1.170) | coding (455/588 nt) | mtlR | mannitol operon repressor | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 2530204 | 81 (1.180) | 5 (0.080) | 5/262 | 8.7 | 6.0% | intergenic (‑28/+43) | ligA/zipA | DNA ligase, NAD(+)‑dependent/FtsZ stabilizer |
| ? | NC_000913_3_hsa_tpiA | = 2530209 | 80 (1.240) | intergenic (‑33/+38) | ligA/zipA | DNA ligase, NAD(+)‑dependent/FtsZ stabilizer | |||||