New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	2808182 =	48 (1.210)	6 (0.160)	6/272	4.2	11.7%	noncoding (52/84 nt)	REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913_3_hsa_tpiA	2808208 =	44 (1.140)					noncoding (78/84 nt)	REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGACACGTTGATGGTTGGATCAAAGCCCACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAAC  >  NC_000913_3_hsa_tpiA/2808044‑2808325                                                                                                                                           |                                                                                                                                                ggACACGTTGATGGTTGGATCAAAGCCCACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCt                                                                                                                                      >  1:181074/1‑150 (MQ=255) ggACACGTTGATGGTTGGATCAAAGCCCACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGACGTTCTGTGGACAATGCCTGATGCGACGCt                                                                                                                                      <  2:605094/150‑1 (MQ=255)  gACACGTTGATGGTTGGATCAAAGCCCCGCGGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTg                                                                                                                                     >  2:675610/1‑150 (MQ=255)    aacGTTGATGGGTGGATCAAAGCCCACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGgc                                                                                                                                   <  2:413320/149‑1 (MQ=255)       gTTGATGGTTGGATCAAAGCCCACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGcgcg                                                                                                                                >  1:112454/1‑150 (MQ=255)         tGATGGTTGGATCAAAGCCCACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTc                                                                                                                              <  1:61894/150‑1 (MQ=255)             ggTTGGATCAAAGCCCACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTAt                                                                                                                          <  2:630000/150‑1 (MQ=255)              gTTGGATCAAACCCGAACAGCAGCAGTTCTATGGCTGGGTGAATGAGGCACTGGCAGCGCAGCAGTAATTTTTATTCGGGCGTATGAGGCGTTTTTGCCGTATCCGCCGTTCTGTGCACAATGCCTGATGCGACCCTCCCGCGCCTTATc                                                                                                                         >  2:633144/1‑150 (MQ=255)               ttGGATCAAAGCCCACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCa                                                                                                                        >  2:385126/1‑150 (MQ=255)                tgcaTCAAAGCCCACCAGCAGCAGTGCGATGGCTGGGCGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATCCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCAt                                                                                                                       <  1:211111/147‑1 (MQ=255)                   aTCAAAGCCCACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGcc                                                                                                                    >  1:302864/1‑150 (MQ=255)                       aaGCCCACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGACTACa                                                                                                                >  2:203662/1‑150 (MQ=255)                           ccaccaGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAAcc                                                                                                            >  2:396679/1‑150 (MQ=255)                                  cagcagTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGc                                                                                                     >  1:526407/1‑150 (MQ=255)                                            aTGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTcaac                                                                                           <  2:302864/150‑1 (MQ=255)                                                 tGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatct                                                                                      >  1:154043/1‑150 (MQ=255)                                                    gTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTTCAAACCCCATCGCACATTTCAACAatctatc                                                                                   >  2:486541/1‑150 (MQ=255)                                                    gTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCCACActctatc                                                                                   >  2:188700/1‑150 (MQ=255)                                                     tGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCTCCTTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatctatct                                                                                  <  1:514363/150‑1 (MQ=255)                                                     tGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatctatct                                                                                  >  2:285681/1‑150 (MQ=255)                                                         ttctgcgcTGCCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGAt                                                                                                                                              <  1:195933/82‑1 (MQ=255)                                                         ttctgcgcTGCCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGAt                                                                                                                                              >  2:195933/5‑86 (MQ=255)                                                         tGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCa                                                                              >  1:653969/1‑150 (MQ=255)                                                         tGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCa                                                                              >  1:12327/1‑150 (MQ=255)                                                         gtgggCGCTGGCAGCGCAGAAGTAATTTTTATTCCGTCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGAGGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCa                                                                              <  2:593220/147‑1 (MQ=255)                                                          gAGGCGCTGGCAGCGCAGAATTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCAt                                                                             <  1:157874/150‑1 (MQ=255)                                                               gcTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCat                                                                        <  2:181074/150‑1 (MQ=255)                                                                     aGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATtcat                                                                  <  1:75652/150‑1 (MQ=255)                                                                         cAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAAc                                                              <  1:396679/150‑1 (MQ=255)                                                                                  tttttATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCtat                                                     <  2:582757/150‑1 (MQ=255)                                                                                    tttATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCtatta                                                   >  2:483632/1‑150 (MQ=255)                                                                                    tttATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTAATCCCATATTCATCAACATCCGCtatta                                                   <  2:573862/150‑1 (MQ=255)                                                                                            ggCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTc                                           <  1:675610/150‑1 (MQ=255)                                                                                                 aTAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCt                                      >  2:688646/1‑150 (MQ=255)                                                                                                      gCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTActc                                 >  2:218520/1‑150 (MQ=255)                                                                                                      gCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAatc                                 >  1:12229/1‑150 (MQ=255)                                                                                                        gTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATGTCCAGCTTAatcat                               >  1:228416/1‑150 (MQ=255)                                                                                                                cGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCtgat                       <  1:385126/150‑1 (MQ=255)                                                                                                                   aTCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTAGCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGaa                    >  1:623885/1‑150 (MQ=255)                                                                                                                      cgccgTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGATTAATCATCACCTGATGAACaa                 >  2:37966/1‑150 (MQ=255)                                                                                                                          gTTCTGTGCACAATGCCTGATGCGGCGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCCCATTTCAACAATCTAACGTTCATCCCATATTCATCAACATCCGCCATGATTGATTTCCCACTTATTCACTACCTGCTGAACAAAaat             >  2:131708/1‑150 (MQ=37)                                                                                                                             cTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAaataat          <  2:653969/150‑1 (MQ=255)                                                                                                                                tgCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatctat                                                                                    >  2:146653/1‑73 (MQ=255)                                                                                                                                tgCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatctat                                                                                    <  1:146653/73‑1 (MQ=255)                                                                                                                                tgCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCCTCACCTGATGAACAAAAATAATGAc       >  2:226284/1‑150 (MQ=255)                                                                                                                                    caATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCAt                                                                             >  2:517886/1‑76 (MQ=255)                                                                                                                                    caATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCAt                                                                             <  1:517886/76‑1 (MQ=255)                                                                                                                                     aaTGCCTCATGCGACGCGGGCGCGACTGATCATGCCCACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAAc  <  1:501781/150‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                GGACACGTTGATGGTTGGATCAAAGCCCACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAACATCCGCTATTATTGATTTCCAGCTTAATCATCACCTGATGAACAAAAATAATGACTAAAC  >  NC_000913_3_hsa_tpiA/2808044‑2808325

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.