New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 540528	16 (0.650)	4 (0.170)	4/268	2.8	21.0%	intergenic (+20/‑37)	allB/ybbY	allantoinase/putative uracil/xanthine transporter
	?	NC_000913_3_hsa_tpiA	= 540537	15 (0.650)					intergenic (+29/‑28)	allB/ybbY	allantoinase/putative uracil/xanthine transporter

CCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTC  >  NC_000913_3_hsa_tpiA/540391‑540673                                                                                                                                                   |                                                                                                                                         ccGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGTGGcg                                                                                                                                        <  2:90567‑M2/149‑3 (MQ=255)                  gTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAg                                                                                                                       <  1:195783/149‑1 (MQ=255)                        cGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGgtgtgt                                                                                                                 <  1:156977/149‑1 (MQ=255)                                    tACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGAAGAAAGGTCCATTTATCAATATACATCAACAGGTGTCTTGCCCCTGCAATTCCCGTCCTTGCGGCGGGCATTCTACGGTTAAGGTGTGTTTATGTTCAAtt                                                                                                     <  1:86237/149‑1 (MQ=255)                                         ggtgATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCa                                                                                                <  1:94978/149‑1 (MQ=255)                                           tgatgtgatTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGt                                                                                              >  1:262160/1‑149 (MQ=255)                                                      aCGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCCATTTATCCTTAAACATCAGCAGTACTCTGGCCCCTGCAATGCCTGGGCGTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGaaa                                                                                   <  1:209642/149‑1 (MQ=255)                                                         aCATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCa                                                                                                <  1:234555/133‑1 (MQ=255)                                                         aCATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCa                                                                                                >  2:234555/1‑133 (MQ=255)                                                                       ttCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAAAGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGAttt                                                                  >  1:422112/1‑149 (MQ=255)                                                                              ttGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTCCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGt                                                           >  2:317416/1‑149 (MQ=255)                                                                                   ccGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTACCTTTTGCAGTAGGCCGCGAAAGACTGTTATAGCGATTTAAGTTGttttta                                                      >  2:119414/1‑148 (MQ=255)                                                                                          gTCAATTTATACTTAAACATCAGGAGTAAGCTGGCCCCTGCCATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTAttt                                               <  2:126930/149‑1 (MQ=255)                                                                                                            aTCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTgg                             >  2:104192/1‑149 (MQ=255)                                                                                                                       tCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACg                  >  1:66968/1‑149 (MQ=255)                                                                                                                             cccTGCAATGCCCGTCCTTGCGGcgggcattgcaggggccagattactgctgatgtttaaggataaattgacctttcggcgcaacagggaagccctgttcaa                                                           >  2:216600‑M2/1‑23 (MQ=255)                                                                                                                             cccTGCAATGCCCGTCCTTGCGGcgggcattgcaggggccagattactgctgatgtttaaggataaattgacctttcggcgcaacagggaagccctgttcaa                                                           <  1:216600‑M2/102‑80 (MQ=255)                                                                                                                                tGCAATGCCCGTCCTTGCGGcgggcattgcaggggccagattactgctgatgtttaaggataaattgacctttcggcgcaacagggaagccctgttcaat                                                          <  1:358377‑M2/100‑81 (MQ=255)                                                                                                                                tGCAATGCCCGTCCTTGCGGcgggcattgcaggggccagattactgctgatgtttaaggataaattgacctttcggcgcaacagggaagccctgttcaat                                                          >  2:358377‑M2/1‑20 (MQ=255)                                                                                                                                       cccGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTc  >  2:267673/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                         CCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTC  >  NC_000913_3_hsa_tpiA/540391‑540673

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.