| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 2823511 = | 50 (1.760) | 5 (0.190) | 5/266 | 3.0 | 10.3% | coding (259/1062 nt) | recA | DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor |
| ? | NC_000913_3_hsa_tpiA | 2823549 = | 40 (1.480) | coding (221/1062 nt) | recA | DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GAACGCGCCAGGGCGTCACAGATTTCCAGTGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTCAGCATCGATAAACGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGTAGATTTCGACGATACGGCCCATCGGCAGACCACCTGCCCCAAGCGCGATATCCAGTGAAAGCGAACCGGTAGAGATGGTTTCCA > NC_000913_3_hsa_tpiA/2823363‑2823657 | gctccatcatgcgcctgggtgaagaccgttccatggatgtggaaaccatctctaccggttcgctttcactggatatcgcgcttggggcaggtggtctgccgatgggccgtatcgtcgaaatctacggaccggaaccttccggtaaaacc < 1:475795‑M1/1‑1 (MQ=255) aaCGCGCCAGGGCGTCACAGATTTCCAGTGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTCAGCATCGATAAACGCACAGGTTTTACCTTCa < 1:496865/149‑1 (MQ=255) tccatcatgaccctgggggaagaccgttccatggatgtggaaaccatctctaccggttcgctttcactggatatcgcgcttggggcaggtggtctgccgatgggccgtatcgtcgaaatctacggaccggaatcttccggtaaaacCAc > 2:20109‑M1/147‑149 (MQ=255) tcatgcgcctgggtgaagaccgttccatggatgtggaaaccatctctaccggttcgctttcactggatatcgcgcttggggcaggtggtctgccgatgggccgtatcgtcgaaatctacggacgcgaatcttccggtaaaacAac‑gcta < 2:464730‑M1/7‑2 (MQ=255) ccAGGGCGTCACAGATTTCCAGTGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTCAGCATCGATAAACGCACAGGTTTTACCTTCAc‑gctgc > 2:66720/1‑149 (MQ=255) tCACAGATTTCCAGTGCCTGCTCGCCGGTGACCGGCTGGGAGCACAGCAGGTTGTCGATATCGGCGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTCAGCATCGATAACAGCACAGGTTTTACCTTCAC‑Gctgcgctgcgcc > 2:57002/1‑147 (MQ=255) acaGATTTCCAGTGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTCAGCATCGATAAACGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGa < 2:339162/149‑1 (MQ=255) caGATTTCCAGTGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTCAGCATCGATAAACGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGAt > 1:399332/1‑149 (MQ=255) ttCCAGTGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTCAGCATCGATAAACGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGATCAcc > 1:329745/1‑148 (MQ=255) ttCCAGTGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTCAGCATCGATAAACGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGATCAcc < 2:329745/148‑1 (MQ=255) ttCCAGTGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTCAGCATCGATAAACGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGATCACCt < 2:110526/149‑1 (MQ=255) gaccgttccatggatgtggaaaccatctctaccggttcgctttcactggatatcgcgcttggggcaggtggtctgccgatgggccgtatcgtcgaaatctacggaccggaatcttccggtaaaacCAC‑GCTGCGCTGCGGCGATCACCt < 2:138489‑M1/24‑1 (MQ=255) tCCAGTGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTCAGCATCGATAAACGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGATCACCTg < 1:370470/149‑1 (MQ=255) cAGTGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTCAGCATCGATAAACGCACAGGTTTTACCTGCAC‑GCTGCCCTGCGTGGATccccggaa > 2:314674/1‑145 (MQ=255) gTGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTCAGCATCGATAAACGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGATCACCTGcagc > 1:290423/1‑149 (MQ=255) gCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTCAGCATCGATAAACGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGATCACCTGcagcgt < 1:66720/149‑1 (MQ=255) atggatgtggaaaccatctctaccggttcgctttcactggatatcgcgcttggggcaggtggtctgccgatgggccgtatcgtcgaaatctacggaccggaatcttccggtaaaacCAC‑GCTGCGCTGCGGCGATCACCTGcagcgtca > 1:138489‑M1/117‑149 (MQ=255) gatgtggaaaccatctctaccggttcgctttcactggatatcgcgcttggggcaggtggtctgccgatgggccgtatcgtcgaaatctacggaccggaatcttccggtaaaacCAC‑GCTGCGCTGCGGCGATCACCTGcagcgtcagcg > 2:112065‑M1/114‑149 (MQ=255) cGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTCAGCATCGATAAACGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCgg > 1:72372/1‑149 (MQ=255) gAGCACAGCAGGTTGTCGATATCGACACCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTCAGCATCGATAAACGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTc < 2:365701/149‑1 (MQ=255) gCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTCAGCATCGATAAACGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCg < 2:6718/149‑1 (MQ=255) ccacaGCATGTTGTGGATATCGACGGCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTCAGCATCGATAAACGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCg < 2:11349/148‑1 (MQ=255) cagcagGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTCAGCATCGATAAACGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTc > 1:132032/1‑149 (MQ=255) cagGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTCAGCATCGATAAACGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGt > 2:497890/1‑149 (MQ=255) agGTTGTCGATATCGACGCCCAGTTGACGTGCGTAGATTGGGTCCAGCGCGTGTTCAGCATCGATAAACGCACAGGTTGTACCTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGTa < 2:414403/149‑1 (MQ=255) gTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTCAGCATCGATAAACGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGTTCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGTAGa > 1:345359/1‑149 (MQ=255) gTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGAGTTCAGCATCGATAAACGCAGAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTGCCGGAAGATTCCGGTCCGTAGAttt > 1:450855/1‑149 (MQ=255) tggatatcgcgcttggggcaggtggtctgccgatgggccgtatcgtcgaaatctacggaccggaatcttccggtaaaacCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCAAACGAGGCCGGTCCGTAGATTTc < 2:125934‑M1/70‑1 (MQ=255) cgcgctgggggcaggtggtctgccgatgggccgtatcgtcgaaatctacggaccggaatcttccggtaaaacCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGTAGATTTCGACGATa > 1:125934‑M1/73‑149 (MQ=255) gCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTCAGCATCGATAAACGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGTAGATTTCGACGATACGGc > 1:250713/1‑149 (MQ=255) ttACGTGCGTAGATTGGGTCCAGCGCTTGTTCAGCATCGATAAACGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGTAGATTTCGACGATACGGCCCATCgg < 2:400291/149‑1 (MQ=255) gTGCGTAGATTGGGTCCAGCGCGAGTTCAGCATCGATAAACGCACAGGTGTTACCTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGATTTTATCGGAAGATTCCAGTCCGTAGATTTCGTCGATACGGCCCATCgactga > 2:396072/1‑144 (MQ=255) ggCGTAGATTGGGTCCAGCGCGTGGTCAGCATCGATAAACGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGATCACCCGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGTAGATTTCGACGATACGGCCCATCGGCAGac < 1:101191/148‑1 (MQ=255) gCGTAGATTGGGTCCAGCGCGTGTTCAGCATCGATAAACGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGTAGATTTCGACGATACGGCCCATCGGCAGacc > 1:272132/1‑149 (MQ=255) gTAGATTGGGTCCAGCTCGTGTTCAGCATCGATAAGCGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGTAGATTTCGACGATACGGCCCATCGGCAGaccac > 2:437408/1‑149 (MQ=255) gATTGGGTCCAGCGCGTGTTCAGCATCGATAAACGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGTa < 2:272907/114‑1 (MQ=255) gATTGGGTCCAGCGCGTGTTCAGCATCGATAAACGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGTa > 1:272907/1‑114 (MQ=255) ttGGGTCCAGCGCGTGTTCAGCATCGATAAACGCACAGGTTCT‑CCCACACTGGCGCGCCTCGGCGATCACCTTCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGTAGATTTCGACGATACGGCCCATCGGCAGACCACCTGcc < 1:345760/149‑1 (MQ=255) tcccAGCGCGTTTTCAGCATCGATAACCGCACACGTTTTACCCTCAC‑GCGGCGCTCCGGCGATCACCTGCAGCGCCAGCGTGGTTTTCCCGGAAGATTCCGGTCCGTAGATTTCGACGATACGGCCCATCGGCAGACCACCTGCCCCaa < 1:295441/147‑1 (MQ=255) ccAGCGCGTGTTCAGCATCGATAAACGCACAGTGTTTACCTTCAC‑GCGGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGTAGATTTCGACGATACGGCCCATCGGCAGACCACCTGCCCCAAgc < 2:345359/149‑1 (MQ=255) aGCGCGTGTTCAGCATCGATAAACGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGTAGATTTCGACGATACGGCCCATCGGCAGACCACCTGCCCCAAgcgc < 2:132032/149‑1 (MQ=255) aGCGCGTGTTCAGCATCGATAAACGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGTAGATTTCGACGATACGACCCATCCGCAGACCACCTGCCCCAAccgc > 2:93493/1‑149 (MQ=255) tgtTCAGCATCGATAAACGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGTAGATTTCGACGATACGGCCCATCGGCAGACCACCTGCCCCAAGCGCGATATc < 1:154766/149‑1 (MQ=255) gtTCAGCATCGATAAACGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGTAGATTTCGACGATACGGCCCATCGGCAGACCACCTGCCCCAAGCGCGATATcc > 1:166285/1‑149 (MQ=255) ttCAGCATCGATAAACGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGTAGATTTCGACGATACGGCCCATCGGCAGACCACCTGCCCCAAGCGCGATATCCa > 2:461865/1‑149 (MQ=255) ggctaTAAACGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACAGGAAGATTCCGGTACGTAGATTTCGACGATACGGCCCATTGGCAGACCCCCTGCCCCAAGTGCGATATCCAGTGaaa > 2:462064/5‑149 (MQ=255) cGATAAACGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGTAGATTTCGACGATACGGCCCATCGGCAGACCACCTGCCCCAAGCGCGATATCCAGTGAAAGc < 1:461865/149‑1 (MQ=255) gATAAACGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGTAGATTTCGACGATACGGCCCATCGGCAGACCACCTGCCCCAAGCGCGATATCCAGTGAAAGCg > 1:136263/1‑149 (MQ=255) aCGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGTAGATTTCGACGATACGGCCCATCGGCAGACCACCTGCCCCAAGCGCGATATCCAGTGAAAGCGAACCg < 1:497890/149‑1 (MQ=255) gTTTTACCTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGTAGATTTCGACGATACGGCCCATCGGCAGACCACCTGCCCCAAGCGCGATATCCAGTGAAAGCGAACCGGTAGAGAt > 2:233652/1‑149 (MQ=255) ttttACCTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGTAGATTTCGACGATACGGCCCATCGGCAGACCACCTGCCCCAAGCGCGATATCCAGTGAAAGCGAACCGGTAGAGATg < 2:416744/149‑1 (MQ=255) aCCTTCAC‑GCTGGGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGTAGATTTCGACGATATACCGCACCGGGAGACCACCTGCCGCTAGCGCGATATCCAGTGAAAGCGAACCGGTAGAGATGGttt < 2:357272/149‑1 (MQ=255) tcTTCAC‑GCTGCTCTGCGGCGATCGCCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGTAGATTTCGACGATACGGCCCATCGGCAGACCACCTGCGCCAAGAGCGATATCCAGTGAAAGCGAACCGGTAGAGATGGTTTc < 2:290423/148‑1 (MQ=255) ccgCAC‑GGTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGTAGATTTCGACGATACGGCCCATCGGCAGACCACCTGCCCCAAGCGCGATATCCAGTGAAAGCGAACCGGTAGAGATGGTTTcc > 2:250713‑M1/4‑149 (MQ=255) cTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGGAGGTTGCGGTCCGTAGATTTCGACGATACGGCCCATCGGCAGACCACCTGCCCCAAGCGCGATATCCAGTGAAAGCGAACCGGTAGAGATGGTTTcc > 2:254392/1‑149 (MQ=255) cTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGTAGATTTCGACGATACGGCCCATCGGc > 2:357437/1‑92 (MQ=255) cTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGTAGATTTCGACGATACGGCCCATCGGc < 1:357437/92‑1 (MQ=255) cTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGTAGATTTCGACGATACGGCCCATCGGCAGACCACCTGCCCCAAGCGCGATATCCAGTGAAAGCGAACCGGTAGAGATGGTTTcc > 1:338641/1‑149 (MQ=255) ttCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGTAGATTTCGACGATACGGCCCATCGGCAGACCACCTGCCCCAAGCGCGATATCCAGTGAAAGCGAACCGGTAGAGATGGTTTCca > 1:161667/1‑149 (MQ=255) | GAACGCGCCAGGGCGTCACAGATTTCCAGTGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTCAGCATCGATAAACGCACAGGTTTTACCTTCAC‑GCTGCGCTGCGGCGATCACCTGCAGCGTCAGCGTGGTTTTACCGGAAGATTCCGGTCCGTAGATTTCGACGATACGGCCCATCGGCAGACCACCTGCCCCAAGCGCGATATCCAGTGAAAGCGAACCGGTAGAGATGGTTTCCA > NC_000913_3_hsa_tpiA/2823363‑2823657 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |