New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	4044062 =	33 (1.160)	3 (0.130)	3/228	3.3	9.4%	intergenic (+18/‑137)	dsbA/yihF	periplasmic protein disulfide isomerase I/DUF945 family protein
	?	NC_000913_3_hsa_tpiA	4044088 =	31 (1.340)					intergenic (+44/‑111)	dsbA/yihF	periplasmic protein disulfide isomerase I/DUF945 family protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGCGATGTTTGTTAACGGTAAATATCAGCTGAATCCGCAGGGTATGGATACCAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATAT  >  NC_000913_3_hsa_tpiA/4043927‑4044200                                                                                                                                        |                                                                                                                                           ggCGATGTTTGTTAACGGTAAATATCAGCTGAATCCGCAGGGTATGGATACCAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAata                                                                                                                               <  1:482098/149‑1 (MQ=255)           gttAACGGTAAATATCAGCTGAATCCGCAGGGTATGGATACCAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCt                                                                                                                     >  1:349811/1‑149 (MQ=255)                   tAAATATCAGCTGAATCCGCAGGGTATGGATACCAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGCGCTTTTTttat                                                                                                             >  2:270348/1‑149 (MQ=255)                    aaaTATCAGCTGAATCCGCAGGGTATGGATACCAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTttatt                                                                                                            <  1:125136/149‑1 (MQ=255)                             cggAATCCGCAGGGTATGGATACCAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTtagtaa                                                                                                   >  2:258889/3‑149 (MQ=255)                                     gCAGGGTATGGATACCAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAataaatataaat                                                                                           >  1:47265/1‑149 (MQ=255)                                             tGGATACCAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTg                                                                                   >  1:474622/1‑149 (MQ=255)                                                      gCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTATGATAATGCAt                                                                          >  1:217442/1‑149 (MQ=255)                                                         atatGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACAGGCTTTTTTTATTATTTAATAAATATAAATACATTATGATAATGGATCCt                                                                       >  1:193806/1‑149 (MQ=255)                                                           atGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGc                                                                     >  2:342702/1‑149 (MQ=255)                                                                           agcagTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTc                                                     <  1:270348/149‑1 (MQ=255)                                                                                    ttGAAACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCAAGGGCTTTGTTTATTATTTAATAAATATAAAGATATCCTGGTAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGt                                            <  2:225935/148‑1 (MQ=255)                                                                                    cTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGt                                            <  2:349811/149‑1 (MQ=255)                                                                                     tGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGa                                                                                  >  1:157368/1‑110 (MQ=255)                                                                                     tGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGa                                                                                  <  2:157368/110‑1 (MQ=255)                                                                                      gATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTGTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTgg                                          <  1:42166/149‑1 (MQ=255)                                                                                       aTACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGa                                         >  2:486220/1‑149 (MQ=255)                                                                                            gTGAACTATCTGTCTGATAAAAAATAATTGTATGTAAATTAAATAAAGCCCGTGAATATTCACTGGCTTTTTTTATTATTTAATAAATATAAATATATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTc                                    <  2:348692/149‑1 (MQ=255)                                                                                            gTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTc                                    <  1:94280/149‑1 (MQ=255)                                                                                             tGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGCCATTATTTCAGCATAAGTGGATATTCa                                   >  2:380161/1‑149 (MQ=255)                                                                                             tGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCa                                   >  2:426595/1‑149 (MQ=255)                                                                                                aaTATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAg                                <  2:342102/149‑1 (MQ=255)                                                                                                     cTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTg                           <  1:142387/149‑1 (MQ=255)                                                                                                          tagaaaaaaaTAATTTAAAGAAAACTACAGAAAATACGTGAATATTCACGGTCTTTTTTTGTTATTTAATAAATATAAATCCATTCTGATAATGCATCCTGCCGCTCGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGtt                      <  2:115009/145‑1 (MQ=255)                                                                                                          ctaaaaaaaaTAAGTCAAGTGAAATTACATAAAGCCCGTGTATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCTTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGtt                      <  2:115045/145‑1 (MQ=255)                                                                                                          cGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGCCATTATTTCAGCATAAGTAGATATTCAAAGTTTTGCTGtt                      >  2:412574/1‑149 (MQ=255)                                                                                                          cGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAAGACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGtt                      <  1:70008/149‑1 (MQ=255)                                                                                                              aaaaaaTAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTAt                  <  1:486220/149‑1 (MQ=255)                                                                                                                 aaaTAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAg               >  2:425073/1‑149 (MQ=255)                                                                                                                  aataatTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAgg              >  1:253036/1‑149 (MQ=255)                                                                                                                        tCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAatat        >  2:493797/1‑149 (MQ=255)                                                                                                                            tGTAAATTACATAAAGCCCGTGAATATTCACGGGCGTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTtat    <  2:253036/149‑1 (MQ=255)                                                                                                                              tAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTatat  <  1:258889/149‑1 (MQ=255)                                                                                                                                        |                                                                                                                                           GGCGATGTTTGTTAACGGTAAATATCAGCTGAATCCGCAGGGTATGGATACCAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATAT  >  NC_000913_3_hsa_tpiA/4043927‑4044200

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.