New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 2842429	30 (1.060)	4 (0.150)	4/266	3.4	11.8%	noncoding (7/79 nt)	REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913_3_hsa_tpiA	= 2842445	31 (1.150)					noncoding (23/79 nt)	REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTTTGTTGACCGTGACGACGCAGGCAACGGTACGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGTCCTGATTCCTTAATGAAAAACTACTCTTCTTC  >  NC_000913_3_hsa_tpiA/2842306‑2842584                                                                                                                                            |                                                                                                                                            ctttgtTGACCGTGACGACGCAGGCAACGGTACGCTGACGCGCACGCGTAAGACATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCt                                                                                                                                    >  1:328903/1‑149 (MQ=255)  tttgtTGACCGTGACGACGCAGGCAACGGTACGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTa                                                                                                                                   >  1:427618/1‑149 (MQ=255)      ttgACCGTGACGACGCAGGCAACGGTACGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATg                                                                                                                               >  1:47006/1‑149 (MQ=255)                  acgCAGGCAACGGTACGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCa                                                                                                                   >  1:359738/1‑149 (MQ=255)                  acgCAGGCAACGGTACGCTGACGCGCACGCGTAAGAAATCATTCTGGGGGGCGAGAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTAAATGTCGCCCGAACCa                                                                                                                   >  1:472060/1‑149 (MQ=38)                      aGGCAACGGTACGCTGACGCGCACGCGTAAGAAATCATTCTGGGGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGaa                                                                                                               <  2:417915/149‑1 (MQ=255)                        gCAACGGTACGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAgg                                                                                                             >  1:168782/1‑149 (MQ=255)                             ggTACGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGa                                                                                                        >  2:448529/1‑149 (MQ=255)                                     gACGCGCACGCGTAAGAAATCATTCTGGTAGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAagcgca                                                                                                <  1:301457/149‑1 (MQ=255)                                      aCGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAagcgcag                                                                                               <  2:198042/149‑1 (MQ=255)                                                gTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGc                                                                                     >  1:336540/1‑149 (MQ=255)                                                 tAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCCGCGCATCGGGCa                                                                                    >  2:8601/1‑149 (MQ=255)                                                      aaTCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGGGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTa                                                                               <  2:374572/149‑1 (MQ=255)                                                         cATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCa                                                                            <  1:306844/149‑1 (MQ=255)                                                              tggtggTATACAAAAGTGATTGCCAGTAATGGGGAAGACTTAGAGTAGGTAACAGAGCCGGATGCAGCGTGAACGCCTTATCCGGCCTGCATGTCGCACGAACCATGCAGCCCCGATACGCGCAGCGCATCGGGCGATTTAGCATTTgg                                                                       >  2:36938/1‑149 (MQ=255)                                                                         aaaaGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTg                                                            <  2:163502/149‑1 (MQ=255)                                                                          aaaGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTgg                                                           <  1:448529/149‑1 (MQ=255)                                                                              tGATTGCCAGTAATTGGGAAGATTTAGAGTAGGTACTAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCa                                                       <  2:427618/149‑1 (MQ=255)                                                                                     cAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAagcgca                                                                                                >  1:284321/1‑101 (MQ=255)                                                                                     cAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAagcgca                                                                                                <  2:284321/101‑1 (MQ=255)                                                                                     cAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTg                                                            <  2:75770/137‑1 (MQ=255)                                                                                     cAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTg                                                            >  1:75770/1‑137 (MQ=255)                                                                                         aaTGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGa                                            <  1:402874/149‑1 (MQ=255)                                                                                              ggAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCGTTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATc                                       <  2:263698/149‑1 (MQ=255)                                                                                               gAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATcc                                      <  2:47006/149‑1 (MQ=255)                                                                                                     ttAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCACCAGAGCTGGTTCACCCCATCAAGAACATACCGGTcc                                >  1:220401/1‑149 (MQ=255)                                                                                                           tAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGTCCTGCTTc                          >  1:137478/1‑149 (MQ=255)                                                                                                             ggTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGTCCTGATTCCt                        >  2:312694/1‑149 (MQ=255)                                                                                                                    gTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGTCCTGATTCCTTAATGaa                 <  1:271573/149‑1 (MQ=255)                                                                                                                                  gTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGTCCTGATTCCTTAATGAAAAACTACTcttctt   <  1:285106/149‑1 (MQ=255)                                                                                                                                   tGAACGCCTTAACCGGCCAACATGACGAAAAAAACAAAAAGACCGGAGAAGCCCAGCGCAGCGGACAATTTAGCATTTCGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGTCCTGAAAAAAAAAAAAAAAACTACTCttcttc  <  2:178851/149‑1 (MQ=255)                                                                                                                                            |                                                                                                                                            CTTTGTTGACCGTGACGACGCAGGCAACGGTACGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGTCCTGATTCCTTAATGAAAAACTACTCTTCTTC  >  NC_000913_3_hsa_tpiA/2842306‑2842584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.