New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 3070082	NA (NA)	4 (0.120)	4/270	4.3	NA	noncoding (80/98 nt)	RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913_3_hsa_tpiA	= 3070093	NA (NA)					noncoding (91/98 nt)	RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.

GAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATCGCGTTCAGTTCCTGGAATGCTTTCTCCAGACGAGCGATCATCGAAGTCTGACCGG  >  NC_000913_3_hsa_tpiA/3069949‑3070235                                                                                                                                                 |                                                                                                                                               gAAAAAACCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCa                                                                                                                                            <  1:330739/149‑1 (MQ=255) aaaaaaaTCCCCGCAGAGCGGGGCTAAAACCGGTATCAAAACGTTCTTTGTCATGCCGAATGCGAAGTAAAGTCCTTATCCGGCCTACAAAAACGTGCACACTGAATATATTGCAAGAGACGTGTAGGCCTTGTAAGCCTACCGCGTcc                                                                                                                                            >  2:71739/2‑148 (MQ=255)            cGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGc                                                                                                                                 >  2:500475/1‑149 (MQ=255)                                     cAAGGTGCGCTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCaga                                                                                                        <  1:8111/149‑1 (MQ=255)                                      aaTGTGCGCTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCagag                                                                                                       >  1:375855/1‑149 (MQ=255)                                             gcTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTTTCGAAAAAAAGACCCGCAGAACGGGCCt                                                                                                >  2:465796/1‑149 (MQ=255)                                             gcTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCt                                                                                                <  2:19073/149‑1 (MQ=255)                                             gcTTTGTCATGCCGCATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCt                                                                                                <  1:322785/149‑1 (MQ=255)                                                ttGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga                                                                                             <  1:551060/149‑1 (MQ=255)                                                  gTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTgag                                                                                            <  1:364718/148‑1 (MQ=255)                                                  gTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTgag                                                                                            >  2:364718/1‑148 (MQ=255)                                                  gTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCACAGCGGGCCTTgag                                                                                            >  2:60023/1‑148 (MQ=255)                                                  gTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCACAGCGGGCCTTgag                                                                                            <  1:60023/148‑1 (MQ=255)                                                     aTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATaa                                                                                        <  1:500475/149‑1 (MQ=255)                                                        ccGGATGCGGCGTCAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCa                                                                                     <  1:356389/149‑1 (MQ=255)                                                           gATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGaa                                                                                  >  1:389994/1‑149 (MQ=255)                                                              gcggcgTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATCCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAgg                                                                               <  1:210250/149‑1 (MQ=255)                                                                    tGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATc                                                                         >  2:140073/1‑149 (MQ=255)                                                                        cGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTCGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTAc                                                                     <  1:521881/149‑1 (MQ=255)                                                                         gCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCGGGATGCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACa                                                                    >  1:391019/1‑149 (MQ=255)                                                                            ataacccgCCTACAAAAACCAGCAAATTAAATATATTGCAGTATACATGTAGGCCTGATAAGCGTAGCGCATCAGACAATTTTGCTATTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGaa                                                                 <  2:47482/142‑1 (MQ=37)                                                                               tCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACATGTAGGCCGGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGGAAGGAATATCTTACAGAACGt                                                              >  2:129632/1‑149 (MQ=255)                                                                                  ggCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAg                                                                   >  2:114297/1‑141 (MQ=255)                                                                                  ggCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAg                                                                   <  1:114297/141‑1 (MQ=255)                                                                                  ggCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGa                                                           >  2:453861/1‑149 (MQ=255)                                                                                    ccTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATc                                                         <  2:37295/149‑1 (MQ=255)                                                                                        cAAAAACCTGCAAATTCAATATATTGCAGGATGCGTGTAAGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATCGCGt                                                     >  2:407019/1‑149 (MQ=255)                                                                                         aaaaaCCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATCGCGtt                                                    >  1:345797/1‑149 (MQ=255)                                                                                         aaaaaCCGGCAAGATCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTGGCTTTTGGCGAAAAAAATACCCGCAGGGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATCGCGtt                                                    <  1:66725/149‑1 (MQ=38)                                                                                               cTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATCGCGTTCAGTTc                                              >  2:326934/1‑149 (MQ=255)                                                                                                           tatatTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATCGCGTTCAGTTCCTGGAATGCttt                                  <  2:78879/149‑1 (MQ=255)                                                                                                              atTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATCGCGTTCAGTTCCTGGAATGCTTtctc                               <  1:458347/149‑1 (MQ=255)                                                                                                                 gCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATCGCGTTCAGTTCCTGGAATGCt                                    <  1:459153/141‑1 (MQ=255)                                                                                                                 gCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATCGCGTTCAGTTCCTGGAATGCt                                    >  2:459153/1‑141 (MQ=255)                                                                                                                  cAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGAACCGCAGAGCGAGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATCGCGTTCAGTTCCTGGAATGCTTTCTCCAGa                           >  2:551845/1‑149 (MQ=255)                                                                                                                     gATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATCGCGTTCAGTTCCTGGAATGCTTTCTCCAGACGa                        >  1:178917/1‑149 (MQ=255)                                                                                                                           tgtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATCGCGTTCAGTTCCTGGAATGCTTTCTCCAGACGAGCGatc                  >  1:256334/1‑149 (MQ=255)                                                                                                                                 ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATCGCGTTCAGTTCCTGGAATGCTTTCTCCAGACGAGCGATCATCGaa            <  1:140073/149‑1 (MQ=255)                                                                                                                                     aTAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAACAGACCAGCCGTGCGTTCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACCTCGATCGCGTTCAGTTCCTGGAATGCTTTCTCCAGACGAGCGATCATCGAAGTCt        <  1:114882/149‑1 (MQ=255)                                                                                                                                     aTAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGGACGGACCGTCTCACCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATCGCGTTCAGTTCCTGGAATGCTTTCTCCAGACGAGCGATCATCGAAGTCt        <  1:114906/149‑1 (MQ=255)                                                                                                                                         gCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTgaga                                                                                           <  1:51679/62‑1 (MQ=255)                                                                                                                                         gCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTgaga                                                                                           >  2:51679/1‑62 (MQ=255)                                                                                                                                           gTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATCGCGTTCAGTTCCTGGAATGCTTTCTCCAGACGAGCGATCATCGAAGTCTGACCgg  >  1:258948/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                               GAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATCGCGTTCAGTTCCTGGAATGCTTTCTCCAGACGAGCGATCATCGAAGTCTGACCGG  >  NC_000913_3_hsa_tpiA/3069949‑3070235

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.