New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	3426836 =	NA (NA)	4 (0.120)	4/270	4.3	NA	intergenic (‑53/+122)	rrlD/alaU	23S ribosomal RNA of rrnD operon/tRNA‑Ala
	?	NC_000913_3_hsa_tpiA	3426854 =	NA (NA)					intergenic (‑71/+104)	rrlD/alaU	23S ribosomal RNA of rrnD operon/tRNA‑Ala
Rejected: Coverage evenness skew score above cutoff.

GCTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTTTTATTTAATCACTA  >  NC_000913_3_hsa_tpiA/3426708‑3426951                                                                                                                                                   |                                                                                                  gCTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAgt                                                                                                 <  2:556370/149‑1 (MQ=32)      tCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTc                                                                                            <  1:489757/149‑1 (MQ=32)         cAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTAACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTCTCatt                                                                                         >  2:122965/1‑147 (MQ=12)                 cACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCt                                                                                 >  1:512834/1‑149 (MQ=32)                        tgcATCGCTTCTGTTTTCCAGGTCGTCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGGAGATGTTTCACTTCAGAGTTGCGAAAGTTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCa                                                                          >  2:385233/3‑149 (MQ=11)                                   tGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAag                                                               >  1:479298/1‑149 (MQ=32)                                       tGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTAACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGCTTTTTAAAGGGCa                                                           >  2:305595/1‑149 (MQ=12)                                          ctgggCATCGACCTTGTACGCGTAGTCGCCTGACCTCACAATCCGAAGATGTTTCACTTCAGAGTCGCGCAAATCTGAGAGACTCACGAACAACTTTCCTTGTTCAGTGTTTCAATTTTCAGGTTGAGCCAGACTCTTAAAGAGCaaaa                                                        <  1:496234/147‑1 (MQ=11)                                            gggCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACt                                                      >  2:9025/1‑149 (MQ=35)                                                aTCCACCGTGTCCGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGACAGACTCACGAACCCCTAGCGGCGACTAGTGTTTCAATTTTCAGCTTGATCAAGATTTTTAAAGAGCAAAACTTCGc                                                  >  1:293108/1‑149 (MQ=11)                                                   cACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGt                                               >  1:43385/1‑149 (MQ=40)                                                     ccGTGTACGCTTAGTCGCTTAACCTCAGAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCGAAACTTCGCAGTGa                                             >  2:595727/1‑149 (MQ=255)                                                               tttgTCGCTGAACCTCTCATCGCGAAGGTGGTACACTTCATAGTTGCGAAAGTTTGTGAGACTCACGAACCAATTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGCTCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAg                                   <  2:9990/146‑1 (MQ=14)                                                                tAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCACTTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAgg                                  >  1:592471/1‑149 (MQ=255)                                                                       ttAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACActc                           >  2:543189/1‑149 (MQ=255)                                                                       ttAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACActc                           >  1:232656/1‑149 (MQ=255)                                                                         aaCCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTg                         >  1:602874/1‑149 (MQ=255)                                                                         aaCCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGAGGTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTg                         <  2:554147/149‑1 (MQ=255)                                                                           ccTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGaa                       >  1:14304/1‑149 (MQ=255)                                                                            cTCACAACCGGAGGATGTGTGACTTCAGAGTTGCGAGAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAg                      >  2:598742/1‑149 (MQ=14)                                                                                caACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTAtt                  >  1:603773/1‑149 (MQ=255)                                                                                 aaCCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGGACCCTCTGCAGTAttt                 >  2:304447/1‑149 (MQ=255)                                                                                    ccGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTAtttttt              >  2:160752/1‑149 (MQ=255)                                                                                            gTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTTTTATTTAATc      >  2:202469/1‑149 (MQ=40)                                                                                                cACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAACCTCCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTTTTATTTAATCACTa  <  1:325693/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                  GCTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTTTTATTTAATCACTA  >  NC_000913_3_hsa_tpiA/3426708‑3426951

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.