New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	4385328 =	46 (1.360)	6 (0.180)	6/278	3.4	11.5%	intergenic (+5/‑47)	yjeM/yjeN	putative transporter/uncharacterized protein
	?	NC_000913_3_hsa_tpiA	4385359 =	47 (1.400)					intergenic (+36/‑16)	yjeM/yjeN	putative transporter/uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGGTTGAAGCCGGAGACTGGGACAGCACATTGTGGATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTCT  >  NC_000913_3_hsa_tpiA/4385190‑4385474                                                                                                                                           |                                                                                                                                                   tgGTTGAAGCCGGAGACTGGGACAGCACATTGTGGATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCg                                                                                                                                          <  1:333210/149‑1 (MQ=255)    ttGAAGCCGGAGACTGGGACAGCACATTGTGGATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAGATCCGCAGTGGGCGGTGGCATAACCCGATGCCCTATCGTCt                                                                                                                                       >  2:246719/1‑149 (MQ=255)      gAAGCCGGAGACTGGGACAGCACATTGTGGATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTAc                                                                                                                                     <  1:272194/149‑1 (MQ=255)             gagaCTGGGACAGCACATTGTGGATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCTTGAGGGGGCGGTGGAATAACCCGATGCCCTATCGTATACCTGACgc                                                                                                                              >  1:496503/1‑148 (MQ=255)                    ggACAGCACATTGTGGATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTAGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCg                                                                                                                       >  2:268851/1‑149 (MQ=255)                             aTTGTGGATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAg                                                                                                              <  1:109074/149‑1 (MQ=255)                                 tgGAAGATTGGCGGCCCGGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTCTTGCAGCAGAGTGGCTACAAACCCGCAGTGGGCGAGGGAATACCCCGATGCCCTATCGTCTACCTGACGCTAGAGCGTCAATACAGGaaa                                                                                                          >  2:468197/1‑149 (MQ=255)                                       atTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTAt                                                                                                    >  1:204632/1‑149 (MQ=255)                                         tGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTTCGCGCTTTAACACAACACAGTGGCAAAAAAACCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATgg                                                                                                  <  1:265769/149‑1 (MQ=255)                                             ggcCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAACATCCGCAGTGGGCGGTGGAATCACCCGATGCCCTATCGTCTACCTGACGATAGGCGGTAAAGACAGGCAGTGTTATGGATGa                                                                                              >  1:424384/1‑149 (MQ=255)                                              gcCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGac                                                                                             >  2:593799/1‑149 (MQ=255)                                              gcCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGac                                                                                             >  2:548813/1‑149 (MQ=255)                                               cccTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGaca                                                                                            >  1:22688/1‑149 (MQ=255)                                                ccTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGacac                                                                                           >  2:252461/1‑149 (MQ=255)                                                       tcttctCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCgg                                                                                    <  1:593799/149‑1 (MQ=255)                                                         ttctCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGcc                                                                                                                                                >  2:524126/1‑87 (MQ=255)                                                         ttctCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGcc                                                                                                                                                <  1:524126/87‑1 (MQ=255)                                                         ttctCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGa                                                                                  >  1:520883/1‑149 (MQ=255)                                                               cTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGc                                                                            >  1:586194/1‑149 (MQ=255)                                                                 gTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCaa                                                                          >  1:379425/1‑149 (MQ=255)                                                                  ttAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATg                                                                                                                                                  <  1:243299/76‑1 (MQ=255)                                                                  ttAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATg                                                                                                                                                  >  2:243299/1‑76 (MQ=255)                                                                  ttAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAAt                                                                         >  2:584774/1‑149 (MQ=255)                                                                        aTGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGCCGTAAAGACAGGAAATGTTATGGATGACACATGCCGGGACCCGGCAATAACCGa                                                                   >  2:190956/1‑149 (MQ=255)                                                                         tGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTa                                                                                                                                      >  1:161857/1‑81 (MQ=255)                                                                         tGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTa                                                                                                                                      <  2:161857/81‑1 (MQ=255)                                                                         tGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGaa                                                                  <  2:200447/149‑1 (MQ=255)                                                                          ggCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTaaa                                                                                                                   <  2:324022/99‑1 (MQ=255)                                                                          ggCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTaaa                                                                                                                   >  1:324022/1‑99 (MQ=255)                                                                             gATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAg                                                                                                                           <  1:416325/88‑1 (MQ=255)                                                                             gATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAg                                                                                                                           >  2:416325/1‑88 (MQ=255)                                                                                     aGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAgg                                                      >  1:378152/1‑149 (MQ=255)                                                                                       aaCTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACGCGGCAATAACCGAAGATGAAATCAGGgc                                                    >  1:22920/1‑149 (MQ=255)                                                                                         ttattcgagccgAGGGGCAAAAACTCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCCGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGgcgc                                                  <  1:43668/142‑1 (MQ=255)                                                                                                           aaaaaaTCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATgg                                                                                                  >  1:477385/1‑83 (MQ=255)                                                                                                           aaaaaaTCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATgg                                                                                                  <  2:477385/83‑1 (MQ=255)                                                                                                             aaaaTCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGAt                              <  1:548813/149‑1 (MQ=255)                                                                                                             aaaaTCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATAGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGAt                              <  1:456921/149‑1 (MQ=255)                                                                                                                aTCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTa                           >  1:36303/1‑149 (MQ=255)                                                                                                                        tGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGaa                                                                  >  2:348421/1‑102 (MQ=255)                                                                                                                        tGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGaa                                                                  <  1:348421/102‑1 (MQ=255)                                                                                                                         gggCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGTCAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATa                  <  1:245717/149‑1 (MQ=255)                                                                                                                           gCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATaga                <  2:378152/149‑1 (MQ=255)                                                                                                                                        ccGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCgg                                                                                    >  2:164197/1‑68 (MQ=255)                                                                                                                                        ccGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCgg                                                                                    <  1:164197/68‑1 (MQ=255)                                                                                                                                         cGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGCCATCAGTGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATtctct  <  1:268851/149‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                   TGGTTGAAGCCGGAGACTGGGACAGCACATTGTGGATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTCT  >  NC_000913_3_hsa_tpiA/4385190‑4385474

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.