New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 12078057 (0.160)32 (0.830) 27/254 0.5 79.8% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913_3_hsa_tpiA = 1209602 10 (0.260)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

TCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAA  >  NC_000913_3_hsa_tpiA/1207660‑1207949
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tCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctc                                                                                                                                               >  1:271171‑M1/1‑146 (MQ=255)
   cattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaaa                                                                                                                                            >  2:82958‑M1/128‑149 (MQ=255)
       ccAACCTGGAGAAGGGGCGGCACGACCAGTTACCTACCGCACTTCGCGCGCTGCTGGTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcatta                                                                                                                                        <  2:48749‑M1/149‑11 (MQ=255)
         gttgtagatctgtgttttggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCaa                                                                                                                                      >  2:219707‑M1/122‑149 (MQ=255)
         gttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCaa                                                                                                                                      >  1:206778‑M1/122‑149 (MQ=255)
           ccTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTTCAAACGACTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattcattg                                                                                                                                    >  2:94180‑M1/1‑135 (MQ=255)
            cgggagAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgt                                                                                                                                   <  2:631390‑M1/147‑16 (MQ=255)
              ggAGAAGGGGCGGCACGACGAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcag                                                                                                                                 <  1:169066/149‑1 (MQ=255)
              ggAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttg                                                                                                                                 <  1:155411‑M1/149‑18 (MQ=255)
              ggAGAAGGGGCGGCACGACCAGGTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttg                                                                                                                                 <  1:213419‑M1/149‑18 (MQ=255)
               gagaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTACGTCGGAAAAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttgg                                                                                                                                <  1:173420‑M1/149‑19 (MQ=255)
               gagaAAGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc                                                                                                                                >  1:428737/1‑149 (MQ=255)
                     tgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc                                                                                                                          >  1:315212‑M1/110‑149 (MQ=255)
                       ttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa                                                                                                                        <  1:151581‑M1/42‑1 (MQ=255)
                         ggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGATTGGGAGAAGGctcttcattacctgttggtgtcccggtt                                                                                                                      >  2:18517‑M1/1‑121 (MQ=255)
                            gtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTa                                                                                                                   >  2:548644‑M1/103‑149 (MQ=255)
                            aCGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccg                                                                                                                   >  1:728519‑M1/1‑118 (MQ=255)
                              gACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtg                                                                                                                 >  2:746720‑M1/1‑116 (MQ=255)
                              gACCAGTTACTTACCGCACTGCGCGCGCTGCTGTTAAGCCGCAAGAACCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtg                                                                                                                 <  1:626622‑M1/149‑34 (MQ=255)
                              cacCAGTTACTTACCCCATTGCGCCGGCTCGTGTTAAGCCGCAAGAATCCGTTGGGCGATATCAAATCGGATGGGCCTGTGCAAACGGCTCTCGAGACCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtg                                                                                                                 <  2:148784‑M1/148‑34 (MQ=255)
                                 cAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTCCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggcc                                                                                                              >  2:129152‑M1/1‑113 (MQ=255)
                                        ttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCCTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGt                                                                                                       <  2:13818/149‑1 (MQ=255)
                                            cGCACTTCGCGGGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactc                                                                                                   >  1:463387‑M1/1‑102 (MQ=255)
                                             gCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactcc                                                                                                  >  1:218987‑M1/1‑101 (MQ=255)
                                             gCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactcc                                                                                                  >  1:433377‑M1/1‑101 (MQ=255)
                                               acatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAg                                                                                                >  2:576228‑M1/84‑149 (MQ=255)
                                                 ttCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgcca                                                                                              >  1:120272‑M1/1‑97 (MQ=255)
                                                   agccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCtat                                                                                            >  1:208595‑M1/80‑149 (MQ=255)
                                                    gccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttaaatcgtcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAAATCAATGCAGCAACGGCTGCATTAGGACGCACCGGTTTCATTgctagg                                                                                           <  1:441814‑M1/71‑3 (MQ=255)
                                                      caataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATAcc                                                                                         <  1:681908‑M1/73‑1 (MQ=255)
                                                          tgctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctgg                                                                                     >  1:230793‑M1/1‑88 (MQ=255)
                                                           agaatgtcaactccccctggtcaatgcaggaatgatgtcattttcttttgatttcttgattttcataaacgTGGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTa                                                                                    >  2:146376‑M1/72‑149 (MQ=255)
                                                            gcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGCTAt                                                                                   <  1:559979‑M1/79‑1 (MQ=255)
                                                            ctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggct                                                                                   >  1:236553‑M1/1‑86 (MQ=255)
                                                             catgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATg                                                                                  <  2:85271‑M1/80‑1 (MQ=255)
                                                                 ttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtg                                                                              >  2:518704‑M1/66‑149 (MQ=255)
                                                                   aactccccccggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggt                                                                            >  2:264399‑M1/64‑149 (MQ=255)
                                                                    aatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggtg                                                                           >  2:553248‑M1/63‑149 (MQ=255)
                                                                    aatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggtg                                                                           >  2:151581‑M1/63‑149 (MQ=255)
                                                                      gCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaat                                                                         >  2:502461‑M1/1‑76 (MQ=255)
                                                                           aagccgttTGGCGATATGAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgcggccttcagccagcccgccaacaggccggtggaaatgcaatggtgc                                                                    <  2:632701‑M1/146‑79 (MQ=255)
                                                                            tggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAg                                                                   <  1:51204‑M1/95‑1 (MQ=255)
                                                                              gtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCa                                                                 <  2:276221‑M1/97‑1 (MQ=255)
                                                                                  aagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCaa                                                                                                                                      >  1:443576‑M1/49‑76 (MQ=255)
                                                                                  aagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCaa                                                                                                                                      <  2:443576‑M1/28‑1 (MQ=255)
                                                                                   tGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgcttttt                                                            <  1:746720‑M1/149‑87 (MQ=255)
                                                                                   agcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAg                                                            >  1:417235‑M1/48‑149 (MQ=255)
                                                                                   agcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAg                                                            >  1:291733‑M1/48‑149 (MQ=255)
                                                                                   agcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAg                                                            >  1:276221‑M1/48‑149 (MQ=255)
                                                                                   agcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAg                                                            <  1:510399‑M1/102‑1 (MQ=255)
                                                                                     gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttct                                                          >  2:397347‑M1/1‑61 (MQ=255)
                                                                                     gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgct                                                                <  2:236296‑M1/143‑83 (MQ=255)
                                                                                     gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgct                                                                >  1:236296‑M1/1‑61 (MQ=255)
                                                                                      cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctg                                                         >  1:266086‑M1/1‑60 (MQ=255)
                                                                                        gaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTCTCATAg                                                                                                <  1:200448‑M1/66‑1 (MQ=255)
                                                                                        gaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTCTCATAg                                                                                                >  2:200448‑M1/43‑108 (MQ=255)
                                                                                         aatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAt                                                                                                  <  1:339586‑M1/64‑1 (MQ=255)
                                                                                         aatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAt                                                                                                  >  2:339586‑M1/42‑105 (MQ=255)
                                                                                           tgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCAtt                                                    >  1:626965‑M1/40‑149 (MQ=255)
                                                                                           tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaa                                                    <  2:610418‑M1/149‑95 (MQ=255)
                                                                                           tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaa                                                    <  1:134619‑M1/149‑95 (MQ=255)
                                                                                            gatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTc                                                   >  1:10407‑M1/39‑149 (MQ=255)
                                                                                              tgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAACTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAACCATTCAg                                                 <  2:163317‑M1/113‑1 (MQ=255)
                                                                                                 catttgcttgttatttcttcattttcataaacgCTGGTTTGGGCGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATATCTATACCGGTTATGAGTGGTGGTATTGGTCACTCAGGAACAATTCagtcg                                              <  2:1513‑M1/116‑3 (MQ=255)
                                                                                                        cacagcgcaaacgGCGCACGAAAACCTTGGTTTGCGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagcctctccgccaacaggcttgctgaaatgcaatggtgccgctttttctgctgaagaatacccggaac                                       <  2:641426‑M1/143‑108 (MQ=255)
                                                                                                          gttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAAt                                     <  1:390855‑M1/125‑1 (MQ=255)
                                                                                                             tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggca                                  >  1:470611‑M1/1‑37 (MQ=255)
                                                                                                               cAAAGGGCCGTCGAAAACCTGGGGTAGGGAGAAGGAGCAACACTCACGGCAGCAACGGCTACATTGGGACGCGCGGGTTTCAGGGCTATGCCGCACACGAACGGGTGGATTGGGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGc                                <  2:381144/149‑1 (MQ=255)
                                                                                                               cAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGc                                <  2:428737/149‑1 (MQ=255)
                                                                                                                         tcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaagccttatccg                      >  2:77629‑M1/1‑25 (MQ=255)
                                                                                                                           ataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCCATCAGTAATCATTCAGTGGGGGTGGAATGCCGCCAAAGCATCTGc                    >  2:681908‑M1/8‑149 (MQ=255)
                                                                                                                               aCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaat                >  2:176384‑M1/1‑19 (MQ=255)
                                                                                                                                 cTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgg              >  2:26447/1‑149 (MQ=255)
                                                                                                                                  ttGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaa             >  1:255858‑M1/1‑16 (MQ=255)
                                                                                                                                   gtgttGGGGAGAAGGctctggattagctgtgggtgtgccggttccggggccttcagccactcggccaacaggctggccgaaaggcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaat            <  2:126936‑M1/147‑135 (MQ=255)
                                                                                                                                    ggtcgGGGACAAGTGGCAAAACTCAATGGAGCAAGTGCTACATTAGGACGCAGCGGTTTCATAGCTATACCGGTTATGATTTGTGGTATTGATCAATTAGTAATCAGTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTctgggtg           >  2:268967‑M1/6‑147 (MQ=255)
                                                                                                                                    ggTTTGTGATAAGGctctgcattacctgttgctgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaatt           <  2:243079‑M1/149‑136 (MQ=255)
                                                                                                                                     GTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCTCCGGTTTCATAGCTATACCGGTTATGATTGGTGGGATTGAGCAATCAGTAATCATTAAGTGGGGGTGGAATGCGGCAAAAGCATCTGCCTGTgggggg          <  1:403386‑M1/149‑1 (MQ=255)
                                                                                                                                     GTTGGGGAGAACGAGCAAAACTTAATTCAACAAGAGCTAGATTAGGGCTCACCGGTTTCATAGGTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgggggg          >  2:456105‑M1/1‑149 (MQ=255)
                                                                                                                                         GGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCTTTTATGATTGGTGGTATGGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCTAAAGCATCTGCCTCTGGGGGGGATg      <  1:678249‑M1/149‑1 (MQ=255)
                                                                                                                                         GGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCtctgggggggctg      <  1:306106‑M1/149‑4 (MQ=255)
                                                                                                                                         GGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGACGCAAAAGCATCTGCCTCAGGGGGTGATg      <  1:252281‑M1/149‑1 (MQ=255)
                                                                                                                                          GGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATgg     <  1:428790‑M1/149‑1 (MQ=255)
                                                                                                                                           gagaAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactcagccaacgggctggctaaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggctgatccgacaaataaattgcctgat    >  1:634072‑M1/1‑7 (MQ=255)
                                                                                                                                             gaAGGAGCAAACGTCAAGGCAGCAACTGCTACATTAGGACGCACCTGTTTCATAGCTATACCGTTTATTATTGGTGGTATTGATCAATCAGTAATCATTCAGGGGGGGGGGAATGCCGCAAAAGCATCTGCCTCTTGTGGGGATGGaaa  <  2:99889/149‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                                
TCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAA  >  NC_000913_3_hsa_tpiA/1207660‑1207949

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.