| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 1269119 = | NA (NA) | 7 (0.170) | 7/268 | 4.3 | 14.2% | intergenic (+100/+49) | kdsA/ldrA | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase/toxic polypeptide, small |
| ? | NC_000913_3_hsa_tpiA | 1269628 = | 45 (1.040) | intergenic (+239/+75) | rdlA/ldrB | sRNA antisense regulator affects LdrA translation; proposed addiction module in LDR‑A repeat, with toxic peptide LdrA/toxic polypeptide, small | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTGCATTCCGGTTTTTCAACAGCTGTTACAGTCATTTCATGAGTGCTCTGGATGAGGCTTCCAGCTCGGGTTGCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCCGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCCGCCAGGTCGT > NC_000913_3_hsa_tpiA/1269481‑1269776 | tCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTGCATTCCGGTTTTTCAACAGCTGTTACAGTCATTTCATGAGTGCTCTGGATGAGGCTTCCAGCTCGGGTTGCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATgg < 1:340931/149‑1 (MQ=255) tCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTGCATTCCGGTTTTTCAACAGCTGTTACAGTCATTTCATGAGTGCTCTGGATGAGGCTTCCAGCTCGGGTTGCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCg > 2:214582/1‑149 (MQ=255) ccTGAAATGTTTGCAAGGAAGAGTGCATTGCGGTTTTTCAACAGCTGGTACAGTCATTTCATGAGTGCTCTGGATGAGGCTTCCAGCTCGGGTTGCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTAccc < 2:218188/149‑1 (MQ=255) ttccAATGAAGAGTGCATTCCGGTTTTTCCACAGCTGTTACAGTCATTTCATGAGTGCTCTGGATGAGGCTTCCAGCTCGGGTTGCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCgg < 1:182449/146‑1 (MQ=255) aaTGGAGCGTGCATTCCGGTTTTTCAACAGCTGTTACAGTCATTTCCTGAGTGCTCTGGATGAGGCTTGCCGCTCGGGTTGCCAATATTTACTTGTGGAAGTGATAGGGATTAGATTGGTAGCAGGCTGTTACCCGTGCGGCCGGtttg > 1:686377/1‑148 (MQ=14) aaTGAAGAGTGCATGCCGGTTTTTGAACAGCTGTTACAGTCATTTCATGAGTGCTCTGGATGAGGCTTCCAGCTCGGGTTGCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTc > 1:649403/1‑149 (MQ=255) tGAAGAGTGTTTTGTGGTTTTTTAACAGCTGTTAATGTCATTTCGTGAGTGCTCTGGATGAGGCTTCCAGCTCGGGTTGGAAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCgg < 1:281145/149‑1 (MQ=14) tGAAGAGTGCATTCCGGTTTTTCAACAGCTGTTACAGTCATTTCATGAGTGCTCTGGATGAGGCTTCCAGCTCGGGTTGCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCgg < 1:161899/149‑1 (MQ=255) tCCGGTTGTTCAACAGCTGGTACAGTCAGTTCATGGGGGCTCTGGGTGGGGCTTCCAGCTCGGGTTGCCAATAGTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGca < 2:11016/149‑2 (MQ=14) gccGGGTTTTCAACAGCTGTTACAGTCATTTCATGAGTGCACTGGATGAGGCCTGCAGCTCGGGTTGCCAATATTTACTTGTGGAAGGGATAAAGACAAAAATGGCCGCAGGCTGTAACCCCTGCGGCCGGTTTCGGGCGCATATTGcc < 2:346805/148‑1 (MQ=11) ccGGTTTTTCAACAGCTGTTACAGTCATTTCATGAGTGCTCTGGATGAGGCTTCCAGCTCGGGTTGCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCa < 1:687415/149‑1 (MQ=255) cGGTTTTTCAACAGCTGTTACAGTCATTTCATGAGTGCTCTGGATGAGGCTTCCAGCTCGGGTTGCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCg < 2:537641/128‑1 (MQ=255) cGGTTTTTCAACAGCTGTTACAGTCATTTCATGAGTGCTCTGGATGAGGCTTCCAGCTCGGGTTGCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCg > 1:537641/1‑128 (MQ=255) gTTTTTCAACAGCTGTTACAGTCATTTCATGAGTGCTCTGGATGAGGCTTCCAGCTCGGGTTGCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCa > 1:92348/1‑149 (MQ=255) ttttCAACAGCTGTTACAGTCATTTCATGGGTGCTCTGGATGAGGCTTCCAGCTCGGGTTGCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACg < 2:629175/149‑1 (MQ=255) aatcgCTGTTACAGTCATGTATTGTGTGCTTGGGATGCGGTTTCCAGCTCGGGTTGCCAATATTTACTTGTGTGAGTGATAAAGACAACAATGGCCGCAGGCTGTTTCAGGGGGGGGCGGTGTCGGGCGCATATTGCCATCACGGCAGc < 2:127556/145‑1 (MQ=9) aaCAGGTGTTCCAGTCATTTCATGAGTGCTCTGGAGGAGGCTTCCAGCTCGGGTTGCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGc < 2:130443/149‑1 (MQ=255) tCATTTCATGAGTGCTCTGGATGAGGCTTCCAGCTCGGGTTGCCAATATTTACTTGTGGAAGTGATAAAGACAAGAATGACCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGGAGCCCGtttt > 1:615157/1‑149 (MQ=255) tCATTTCATGAGTGCTCTGGATGAGGCTTCCAGCTCGGGTTGCCAATATTTACTTGTGGAAGCGATAAAGACAAGAGTGGCCGTAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATCTTGCCATCAGGGCAGCCTGACGCCCGtttt > 1:615161/1‑149 (MQ=11) tttCATGAGTGCTCTGGATGAGGCTTCCAGCTCGGGTTGCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCAc > 1:235129/1‑149 (MQ=35) ttCATGAGTGCTCTGGATGAGACGTCCAGCTCGGGTTGCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCCGTTACGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCAcc < 2:686377/149‑1 (MQ=255) aTGAGTGCTCTGGATGAAGCTTCCACCTACGAATACCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGTCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCAAGGCAGCCTTACGCCCGTTTTCACCttc > 2:352366/1‑148 (MQ=11) gCTCTGGATGAGGCTTCCAGCTTGGGTTGCCAATATTGACTTGGGGAAGGGATAAATACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCg < 1:1777/149‑1 (MQ=11) ctctGGATGAGGCTTCCAGCTCGGGTTGCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCgg > 1:45899/1‑149 (MQ=35) tGGATGAGGCTTCCAGCTCGGGTTGCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTCTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTa > 2:655059/1‑149 (MQ=25) gATGAGGCTTCCAGCTCGGGTTGCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCa < 1:208413/132‑1 (MQ=34) gATGAGGCTTCCAGCTCGGGTTGCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCa > 2:208413/1‑132 (MQ=37) aGGCCTCCAGCTCGGGTTGCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGccac < 1:214299/149‑1 (MQ=18) gCTTCCAGCTCGGGTTGCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGccacca > 2:203083/1‑149 (MQ=32) ttCCAGCTCGGGTTGCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGc > 1:92029/1‑149 (MQ=32) cAGCTCGGGTTGCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCCGa > 1:605956/1‑149 (MQ=34) cGGGTTGCCAATATTTTCTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCCGACAATc < 1:606059/149‑1 (MQ=25) cAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCCGACAATCGCTGCGGt > 2:397812/1‑149 (MQ=35) cAATATTAACTTGTGGAAGCGATAAAGACAAAAATGGCCGGAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCCGACAATCGCTGCGGt < 1:651397/149‑1 (MQ=12) aacttttAGTTGTGGAGCGGATAAAGACAAAAATGGCTGTAGGCTGTTACCCCGCCCGCCGGTTCCGGGCGCATATTGCCATCACGGCAGCCTTACGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCCGACAATCGCTGCGGta < 2:133919/145‑1 (MQ=11) tttACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGCGCGCATATTGCCATCACTGCAGCCTGACGCCCGTTTTCACCTGACTTCCGGTTACGCCACCAGCCGACAATCGCTGCGGtaatga > 2:497641/1‑147 (MQ=255) aGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGAc > 2:507494/1‑80 (MQ=34) aGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGAc < 1:507494/80‑1 (MQ=34) gTGATAAAGACAAAACTGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACCCCACCAGCCGACAATCGCTGCGGTCATAATTCCCGCCCGGAt > 2:512231/1‑149 (MQ=255) aaaGACAAAATTGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATCGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTGACGCCACCAGCCGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTg < 1:161749/149‑1 (MQ=12) aCAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCCGCATGACGCCGGTTTTCACCTTACTTCCGGTTACGCTACCACCCGACTATCGCTGCGGTAATAATTCCCGCCAGGATCGGTgccgc > 2:347132/1‑149 (MQ=11) aCAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCCGACAATCGCTGCGGTAATAATTCCCGCCAGGGTCGGTgccgc > 2:488799/1‑149 (MQ=25) aCAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCCGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTgccgc > 2:567197/1‑149 (MQ=34) cAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCCGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTgccgcc < 1:203083/149‑1 (MQ=34) aTGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACACCACCAGCCGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCCCCCAggcc > 1:137559/1‑147 (MQ=255) ggCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCAACTTACTTCCGGTTACGCCACCAGCCGACAATCGCTGCGGTAATAATTCCCGCGAGGATCGGGGCCGGCAGGTCGt > 1:294985/1‑149 (MQ=255) | TCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTGCATTCCGGTTTTTCAACAGCTGTTACAGTCATTTCATGAGTGCTCTGGATGAGGCTTCCAGCTCGGGTTGCCAATATTTACTTGTGGAAGTGATAAAGACAAAAATGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCCGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCCGCCAGGTCGT > NC_000913_3_hsa_tpiA/1269481‑1269776 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |