New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 4543158	39 (1.040)	8 (0.220)	8/266	3.1	17.8%	coding (62/549 nt)	fimA	major type 1 subunit fimbrin (pilin)
	?	NC_000913_3_hsa_tpiA	= 4543162	37 (1.040)					coding (66/549 nt)	fimA	major type 1 subunit fimbrin (pilin)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCACGACGGTTAATGGTGGGACCGTTCACTTTAAAGGGGAAGTTGTTAACGCCGCTTGCGCAGTTGATGCAGGCTCTGTTGATCAAACCGTTCAGTTAGGACAGGTTCGTACCGCATCGCTGGCACAGGAAG  >  NC_000913_3_hsa_tpiA/4543012‑4543301                                                                                                                                                   |                                                                                                                                                tGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTCTACAGCGGctct                                                                                                                                              >  2:607204/1‑150 (MQ=255)      gTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAATTAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATAGTTGTTCTGTTGGATCTGTCCCTCAGTTCTCCAGCGGTGCTGGCCg                                                                                                                                         >  2:539142/1‑150 (MQ=255)               gTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAAGAGTTTTTTGAAAGGGAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCCGTTCTACAGGGGCTCTGACCACTGCCacga                                                                                                                                >  1:582917/1‑150 (MQ=255)                 ttACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCacgacg                                                                                                                              <  1:52681/150‑1 (MQ=255)                    caaaacaaaGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCACGACGGtt                                                                                                                           >  1:49879/1‑150 (MQ=255)                     aaaacaaaGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGCCAGGACAGAAGAATGCACATTAACTTTATGGCATTCGTTGTTATGTGGTTTTTGTTCATCAGCTGTACTTCGTCTCTGTCCGCTGCCACGACGGttt                                                                                                                          >  2:57937/1‑149 (MQ=255)                       aacaaaGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCACGACGGTTAAt                                                                                                                        <  1:118182/150‑1 (MQ=255)                          aaaGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCACGACGGTTAAtggt                                                                                                                     <  1:115939/150‑1 (MQ=255)                            aGTGTACAGAACGACTGTCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCACGACGGTTAAtggtgg                                                                                                                   <  1:163859/150‑1 (MQ=255)                              tgtACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCACGACGGTTAATGGTGGGa                                                                                                                 >  2:98340/1‑150 (MQ=255)                                tACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCACGACGGTTAATGGTGGGAcc                                                                                                               >  1:513131/1‑150 (MQ=255)                                    gAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCACGACGGTTAATGGTGGGACCGTTc                                                                                                           >  2:86055/1‑150 (MQ=255)                                     aaCGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCACGACGGTTAATGGTGGGACCGTTCa                                                                                                          <  1:86055/150‑1 (MQ=255)                                            gCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCACGACGGTTAATGGTGGGACCGTTCACTTTaaa                                                                                                   <  2:49879/150‑1 (MQ=255)                                             cccATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCACGACGGTTAATGGTGGGACCGTTCACTTTAAAg                                                                                                  <  2:513131/150‑1 (MQ=255)                                                    cGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCACGACGGTTAATGGTGGGACCGTTCACTTTAAAGGGGAAgt                                                                                           <  1:508440/150‑1 (MQ=255)                                                     gATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCACGACGGTTAATGGTGGGACCGTTCACTTTAAAGGGGAAgtt                                                                                          <  2:344816/150‑1 (MQ=255)                                                     gATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCACGACGGTTAATGGTGGGACCGTTCACTTTAAAGGGGAAgtt                                                                                          >  1:625378/1‑150 (MQ=255)                                                           gAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCACGACGGTTAATGGTGGGACCGTTCACTTTAAAGGGGAACTTGTTAAc                                                                                    >  1:532861/1‑150 (MQ=255)                                                                aGTTGTTTCAAAGGACAGGAGCAGGAAAATTAAATCCCTGGCAATCGGTGTTCTGTCGGCTCTGTCCCTCAGTTTTACAGCGGCTCTGGCCGCTGCCACGACGGTTAATGGTGGGACCGTTCACTTTAAAGGGGAAGTTGTTAAcgccgc                                                                               <  2:568371/150‑1 (MQ=255)                                                                    ttgtGAAAATAAAGCAGCATGCTTAAGAAAGCTCTGGCAATCGTTGTTCGGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTTGCCGCTGCCACTGCTGTTAATGGTGGGACCGTTCACTTTAAATGGGAAGTTGTTAACGCCGCTTgc                                                                           <  2:631564/147‑1 (MQ=255)                                                                     tttGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCACGACGGTTAATGGTGGGACCGTTCACTTTAAAGGGGAAGTTGTTAACGCCGCTTgcg                                                                          <  1:607204/150‑1 (MQ=255)                                                                       tGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCACGACGGTTAATGGTGGGACCGTTCACTTTAAAGGGGAAGTTGTTAACGCCGCTCGCGCa                                                                        <  1:394459/150‑1 (MQ=255)                                                                       tGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGCTCTGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCACGACGGTTAATGGTGGGACCGTTCACTTTAAAGGGGAAGTTGTTAACGCCGCTTGCGCa                                                                        <  1:57937/150‑1 (MQ=255)                                                                                       tGAAAATTAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCACGACGGTTAAtggtg                                                                                                                    <  2:499652/90‑1 (MQ=255)                                                                                       tGAAAATTAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCACGACGGTTAAtggtg                                                                                                                    >  1:499652/1‑90 (MQ=255)                                                                                       tGAAAATTAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCACGACGGTTAATGGTGGGACCGTTCACTTTAAAGGGGAAGTTGTTAACGCCGCTTGCGCAGTTGATGCAGGCTCTg                                                        <  2:625378/150‑1 (MQ=255)                                                                                           aaTTAAAACTCTGGCCATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTCTACACAGCATCGGGCCGCTGCCACGACGGTTAATGGTGGGACCGTTCACTTTAAAGGGGAAGTTGTTAACGCCGCTTGCGCAGTTGATGCAGGCTCTGTTGa                                                    <  1:648030/150‑1 (MQ=255)                                                                                             ttAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTAAACCGCGGCTCTGGCCGCTGCCACGACGGTTAATGGTGGGACCGTTCACTTTAAAGGGGAAGTTGTTAACGCCGCTTGCGCAGTTGATGCAGGCTCTGTTGATc                                                  <  1:484914/150‑1 (MQ=255)                                                                                              tAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCACGACGGTTAATGGTGGGACCGTTCACTTTAAAGGGGAAGTTGTTAACGCAGCTTGTGCAGTTGATGAATGCTCTTGTGATcg                                                 >  2:431131/1‑149 (MQ=255)                                                                                                aaaCTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCACGACGGTTAATGGTGGGACCGTTCACTTTAAAGGGGAAGTTGTTAACGCCGCTTGCGCAGTTGATACAGGCTCTGTTGATCaaa                                               >  2:567488/1‑150 (MQ=255)                                                                                                                     tGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCACGACGGTTAATGGTGGGACCGTTCACTTTCAAGGGGAAGTTGTTAACGCCGCTTGCGCAGTTGATGCAGGCTCTGTTGATCAAACCGTTCAGGTAGGCCGGGTTc                          >  2:355932/1‑150 (MQ=255)                                                                                                                     tGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCACGACGGTTAATGGTGGGACCGTTCACTTTAAAGGGGAAGTTGTTAACGCCGCTTGCGCAGTTGATGCAGGCTCTGTTGATCAAACCGTTCAGTTAGGACAGGTTc                          <  1:198667/150‑1 (MQ=255)                                                                                                                                        ttCTACAGCGGCTCTGGCCGCTGCCACGACGGTTAATGGTGGGACCGTTCACTTTAAAGGGGAAGTTGTTAACGCCGCTTGCGCAGTTGATGCAGGCTCTGTTGATCAAACCGTTCAGTTAGGACAGGTTCGTACCGCATCGCTGGcaca       >  2:279415/1‑150 (MQ=255)                                                                                                                                           tACAGCGGCTCTGGCCGCTGCCACGACGGTTAATGGTGGGACCGTTCACTTTAAAGGGGAAGTTGTTAACGCCGCTTGCGCAGTTGATGCAGGCTCTGTTGATCAAACCGTTCAGTTAGGACAGGTTCGTAc                      <  2:642195/132‑1 (MQ=255)                                                                                                                                           tACAGCGGCTCTGGCCGCTGCCACGACGGTTAATGGTGGGACCGTTCACTTTAAAGGGGAAGTTGTTAACGCCGCTTGCGCAGTTGATGCAGGCTCTGTTGATCAAACCGTTCAGTTAGGACAGGTTCGTAc                      >  1:642195/1‑132 (MQ=255)                                                                                                                                            aCAGCGGCTCTGGCCGCTGCCACGACGGTTAATGGTGGGACCGTTCACTTTAAAGGGGAAGTTGTTAACGCCGCTTGCGCAGt                                                                      >  2:151516/1‑83 (MQ=255)                                                                                                                                            aCAGCGGCTCTGGCCGCTGCCACGACGGTTAATGGTGGGACCGTTCACTTTAAAGGGGAAGTTGTTAACGCCGCTTGCGCAGt                                                                      <  1:151516/83‑1 (MQ=255)                                                                                                                                             cAGCGGCTCTGGCCGCTGCCACGACGGTTAATGGTGAGACCGTTCACTTTAAAGGGGAAATTGTTAACGCCGCTTGCGCAGTTGATGCAGGCCCGGTTGAGCAAACTGTTCAGTTAGGCNAGGTTCGTACCGCCTTNCTGGCACaggacg  >  1:240930/1‑148 (MQ=255)                                                                                                                                                   |                                                                                                                                                TGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCACGACGGTTAATGGTGGGACCGTTCACTTTAAAGGGGAAGTTGTTAACGCCGCTTGCGCAGTTGATGCAGGCTCTGTTGATCAAACCGTTCAGTTAGGACAGGTTCGTACCGCATCGCTGGCACAGGAAG  >  NC_000913_3_hsa_tpiA/4543012‑4543301

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.