New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	2304842 =	NA (NA)	9 (0.250)	7/266	3.4	NA	noncoding (426/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	NC_000913_3_hsa_tpiA	= 2431012	NA (NA)					noncoding (84/84 nt)	REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.

TGAAAAAATATTCAACGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCAACCAGAATACGGGTAATTTTACCCTGCACTGGCGTGGAT  >  NC_000913_3_hsa_tpiA/2430872‑2431160                                                                                                                                             |                                                                                                                                                     tGAAAAAATATTCAACGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTa                                                                                                                                             >  1:483262/1‑150 (MQ=255)            tCAACGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTAGGATGCGGCGTAAACGCGTTATTCGACGTACGGTTTTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCGTCAGGCCAGGCCGTATTATTTCGGCg                                                                                                                                  >  2:219568/1‑150 (MQ=255)                         cTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTAc                                                                                                                     >  1:60269/1‑150 (MQ=255)                          tttttATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTAcc                                                                                                                    >  1:470171/1‑150 (MQ=255)                                 gCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCAc                                                                                                             >  1:37041/1‑150 (MQ=255)                                  ccTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACt                                                                                                            >  1:553743/1‑150 (MQ=255)                                    tttGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTa                                                                                                          >  1:155970/1‑150 (MQ=255)                                    tttGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTa                                                                                                          >  2:459084/1‑150 (MQ=255)                                     ttGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTaa                                                                                                         <  2:16252/150‑1 (MQ=255)                                     ttGCGGCATCGGGCAATCTGTGTCGGATGCGGCGTAAACCCCTTATCCGACCTACAGTTCTACCCTTGCGTAGGCCTGATAAGACGCGCCAGCGACGAATCAGGCAACACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTaa                                                                                                         <  2:657252/150‑1 (MQ=38)                                                ggCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGtt                                                                                              >  1:309250/1‑150 (MQ=255)                                                 gCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTg                                                                                             >  1:103034/1‑150 (MQ=255)                                                   aaTGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCt                                                                                           <  1:250903/150‑1 (MQ=255)                                                    aTGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCtt                                                                                          <  1:109857/150‑1 (MQ=255)                                                       cGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCaa                                                                                       <  1:459084/150‑1 (MQ=255)                                                                   ggcgTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGGCGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGa                                                                           >  1:439459/1‑150 (MQ=255)                                                                   ggcgTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTACTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGa                                                                           >  2:531415/1‑150 (MQ=255)                                                                    gcgTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGaa                                                                          <  2:103034/150‑1 (MQ=255)                                                                         aaCGCCTTATCCGACCTACGGTTCTACCCCTGCGTAAGCCTGATAAGACGCGCCAGCGTCGCACCCAGAAAGCCCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGCAAGTTGCTTCAACTCACCCAGCGAAACttt                                                                     >  2:440781/1‑150 (MQ=255)                                                                         aaCGCCTTATCCGACCGACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTCATTCGGCGTATAGAATATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCttt                                                                     <  2:572822/150‑1 (MQ=39)                                                                                  tCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGACCCTTTCAGCTTATc                                                            >  1:607624/1‑150 (MQ=255)                                                                                  tCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATc                                                            <  2:640606/150‑1 (MQ=255)                                                                                        ccaccaatCTACCCCGCCGTAGCCCTGATAAGACCCGCCACCGACGCATCACGCGAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGa                                                      <  1:219568/143‑1 (MQ=255)                                                                                        cTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGa                                                      <  2:199959/150‑1 (MQ=255)                                                                                                     ccTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTCTAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTCTCTTTCGAGGCCCCCGccccc                                         >  2:377911/1‑149 (MQ=39)                                                                                                      cTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCaa                                        >  2:369918/1‑150 (MQ=255)                                                                                                      cTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACAACGCCACTTAAGACAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTTAGCTTAGCTTTCCGGGCACCCGGCCCaa                                        >  1:633506/1‑150 (MQ=38)                                                                                                       cgcgcAGGCTGGATAAGACTGCCAAGCGTCCCATCAGGCAAGATCGTCTTAATTCGTCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTAACCCAGCGAACCTTTCAGCTGATCTTTCGAGGCATCCGGCCCAAc                                       <  2:208814/149‑1 (MQ=255)                                                                                                                   aTAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCGAACCAGAATACgggg                           >  1:284198/1‑149 (MQ=255)                                                                                                                       gACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCAACCAGAATACGGGTAAtt                       >  2:350424/1‑150 (MQ=255)                                                                                                                        aCGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCAACCAGAATACGGGTAAttt                      <  2:60269/150‑1 (MQ=255)                                                                                                                           cgcCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCAACCAGAATACGGGTAATTTTAc                   <  2:37041/150‑1 (MQ=255)                                                                                                                              cAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCAACCAGAATACGGGTAATTTTACCCt                >  2:466563/1‑150 (MQ=255)                                                                                                                                       aTCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCttt                                                         <  2:40810/100‑1 (MQ=255)                                                                                                                                       aTCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCttt                                                         >  1:40810/1‑100 (MQ=255)                                                                                                                                         cAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCAACCAGAATACGGGTAATTTTACCCTGCACTGGCGTg     <  2:155970/150‑1 (MQ=255)                                                                                                                                            gCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCAACCAGAATACGGGTAATTTTACCCTGCACTGGCGTGGAt  <  2:470171/150‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                     TGAAAAAATATTCAACGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCAACCAGAATACGGGTAATTTTACCCTGCACTGGCGTGGAT  >  NC_000913_3_hsa_tpiA/2430872‑2431160

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.