New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	2304842 =	NA (NA)	9 (0.250)	7/266	3.4	18.1%	noncoding (426/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	NC_000913_3_hsa_tpiA	3042440 =	43 (1.140)					noncoding (120/155 nt)	REP210 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP210 (repetitive extragenic palindromic) element; contains 3 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGCCGAGCACGAAGCCGTGCCAGATGGCATGGTTGTATGGAATGCGTTT  >  NC_000913_3_hsa_tpiA/3042291‑3042587                                                                                                                                                      |                                                                                                                                                    tAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATg                                                                                                                                                     >  2:95807/1‑150 (MQ=255) tAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATg                                                                                                                                                     >  2:545073/1‑150 (MQ=255)        ttttATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATg                                                                                                                                              <  1:323980/149‑1 (MQ=255)         tttAGCGCTGCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGTGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGTGTTCACGCCTAATCCGGCAGTTGTGCTCCGATGCCTGATGc                                                                                                                                             <  2:163476/150‑1 (MQ=255)               gCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCt                                                                                                                                       >  1:608710/1‑150 (MQ=255)                     ggCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGcgcg                                                                                                                                 >  2:485408/1‑150 (MQ=255)                             cccccggATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCAGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCa                                                                                                                         <  1:193145/144‑1 (MQ=255)                               gCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAgg                                                                                                                       >  1:241804/1‑150 (MQ=255)                                ccTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGAGGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGc                                                                                                                      >  1:650385/1‑150 (MQ=255)                                ccTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGc                                                                                                                      >  1:57326/1‑150 (MQ=255)                                        gACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAg                                                                                                              <  2:209487/150‑1 (MQ=255)                                        gACGCTGGCGCGTCTTATCATGTCTAGGATTTGATGCCTTTATCACAACAGGGAAGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCCGTTGTCCTCCGATGCCTGCTGCAACGCTGGAGCGGCTTATCCGGCCTACTAAg                                                                                                              >  2:126310/1‑150 (MQ=37)                                               gcgcGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATAcc                                                                                                       <  2:237230/150‑1 (MQ=255)                                                       tctCATGTCTGGGTTTTGATGCCTTTATTACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGc                                                                                               <  2:128782/148‑1 (MQ=255)                                                         tCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGACTCCGGCAGTTGTGCTCCGATGCCTGATGCTGCGCTGGCGCGTCTTATCCGGCCTACAAAGGCATACCCATTCGGCCt                                                                                             >  2:659227/1‑150 (MQ=37)                                                           aTGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGc                                                                                           <  1:95807/150‑1 (MQ=255)                                                             gTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGccc                                                                                         <  2:57326/150‑1 (MQ=255)                                                              tCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGCATCCCGCAGTTGTGCTCCCATGCCTGATACGCCGCTGCCGCGTCTTATCAAGACTACAAAGGCCTGCCCCTTACAcccaccca                                                                                        >  2:33535/1‑150 (MQ=25)                                                                  ggATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAatat                                                                                    >  1:370422/1‑150 (MQ=255)                                                                      ttGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTGCAAATTCATACCCATTACGCCTGCCCAATATACaa                                                                                <  2:312458/150‑1 (MQ=255)                                                                        gATGGCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAACCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAAt                                                                              <  1:221398/150‑1 (MQ=255)                                                                             cTTTATGACAACAGGAACGAGGACCGTATATCGAATAAGGCGTACACGCCGAATCCGGCAGTTGTGCACAGATGCCTGATGCGACGCTGGCGCATCTTATCAGGCCTACGAAGGAATACCCATTACGCGTGCCGAATATACAGATTGATc                                                                         >  2:543537/1‑150 (MQ=21)                                                                               ttATCACAACAGGGCCGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGc                                                                       <  1:65963/150‑1 (MQ=255)                                                                                 aTCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAAt                                                                              >  1:640292/1‑141 (MQ=255)                                                                                 aTCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAAt                                                                              <  2:640292/141‑1 (MQ=255)                                                                                      aacaGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTc                                                                                                                               <  1:588757/87‑1 (MQ=255)                                                                                      aacaGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTc                                                                                                                               >  2:588757/1‑87 (MQ=255)                                                                                      aacaGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAg                                                                <  2:241804/150‑1 (MQ=255)                                                                                       acaGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGt                                                               <  1:485408/150‑1 (MQ=255)                                                                                              cGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGGGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACACATAGATCGCCAGAAAGTAGcacaa                                                        >  2:184778/1‑149 (MQ=255)                                                                                                  gCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGTCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTa                                                    <  1:10975/150‑1 (MQ=255)                                                                                                         gATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGCCGa                                             <  2:120198/150‑1 (MQ=255)                                                                                                                   ggCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGCCGAGCACGAAGcc                                   >  1:52591/1‑150 (MQ=255)                                                                                                                            gCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGCCGAGCACGAAGCCGTGCCAGAt                          >  1:335188/1‑150 (MQ=255)                                                                                                                                     ggCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACaaa                                                                                                               <  2:51367/56‑1 (MQ=255)                                                                                                                                     ggCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACaaa                                                                                                               >  1:51367/1‑56 (MQ=255)                                                                                                                                     ggCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGc                                                                       <  1:622805/96‑1 (MQ=255)                                                                                                                                     ggCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGc                                                                       >  2:622805/1‑96 (MQ=255)                                                                                                                                     ggCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGCCGAGCACGAAGCCGTGCCAGATGGCATGGtt                 >  1:312366/1‑150 (MQ=255)                                                                                                                                     ggCAGTTGTGCGCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGCCGAGCACGAAGCCGTGCCAGATGGCATGGtt                 <  1:467760/150‑1 (MQ=255)                                                                                                                                        aggtgtgCTCAGAGGCCTGATACGACGCTGTCACGGCTTATCCGGCCTACAAAGGCATACCTATTACGCCGGCCCGAGATCTAAATAGATGTCCAGAAAGTGGCACACACTACCGCCGAGCACCAAGTGGTGTCCGTTGGCATGGTTGTa              <  1:543537/147‑1 (MQ=255)                                                                                                                                                tCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGCCGAGCACGAAGCCGTGCCAGATGGCATGGTTGTATGGAATGc      >  1:337144/1‑150 (MQ=255)                                                                                                                                                    aTGCCTGATTCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGCCGAGCACGAAGCCGTGCCAGATGGCATGGTTGTATGGAATGCGttt  <  2:365097/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                    TAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGCCGAGCACGAAGCCGTGCCAGATGGCATGGTTGTATGGAATGCGTTT  >  NC_000913_3_hsa_tpiA/3042291‑3042587

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.