New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	2304842 =	NA (NA)	9 (0.250)	7/266	3.4	17.7%	noncoding (426/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	NC_000913_3_hsa_tpiA	4027518 =	44 (1.170)					noncoding (197/281 nt)	REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences	REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCA  >  NC_000913_3_hsa_tpiA/4027377‑4027667                                                                                                                                               |                                                                                                                                                      ccGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGTCAATTGGGGCATTATCCCTGGTGc                                                                                                                                               >  2:116305/1‑150 (MQ=18)   ggATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGGTGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGGCAATTGGTGCATGATGCCTGATGCGa                                                                                                                                             <  2:32301/150‑1 (MQ=255)       aaGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGGCAATTGGTGCATGATGCCTGCAGCGACGCt                                                                                                                                         >  1:539967/1‑150 (MQ=255)         ggCGTTTACGCCGCATCCGGCAATAGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTgg                                                                                                                                       >  1:573078/1‑150 (MQ=255)           cGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGGCAATTGGTGCATGATGCCTGATGCAACGCTAgcg                                                                                                                                     >  1:641456/1‑150 (MQ=255)             tttACGACGCATCCGGCAATTTGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAACTAGACCGAACCGTAGGCCGGATAACGCGTTTACGCCCC‑AGCCGGAAATGGGTGCATGACGCGTGATGTCACGCTGGcgcg                                                                                                                                   >  2:322459/1‑150 (MQ=17)               taggctccATGCGGTAATTGGCGAATGATGCCGGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTc                                                                                                                                 <  2:115253/143‑1 (MQ=14)                aCGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGCTAAGGCCTTT‑CTCCGCTGACCTGCAATTTGTGCATGATGCCTGATGCTACGCATGCGCGTCt                                                                                                                                >  1:51450/1‑150 (MQ=17)                  gccgcATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTa                                                                                                                              >  2:190178/1‑150 (MQ=255)                    cgcATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAGCCGTAGGCCGGATAAGGCGTTTAAGCCGC‑ATCCGGCCATTGGTTCATGATGCCTCATGCGCCGCTGGCGCGGATTATc                                                                                                                            >  2:38344/1‑150 (MQ=17)                          cGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCGGC‑ATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCt                                                                                                                      >  1:261964/1‑150 (MQ=255)                                  ggggCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGt                                                                                                              <  2:523343/147‑1 (MQ=255)                                      cATGATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCg                                                                                                          <  1:116305/150‑1 (MQ=255)                                       atgatgCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGc                                                                                                                        <  1:227511/135‑1 (MQ=255)                                       atgatgCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGc                                                                                                                        >  2:227511/1‑135 (MQ=255)                                         gatgCCTGATGGGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGAt                                                                                                       <  2:396008/150‑1 (MQ=255)                                          atgCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGGCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATc                                                                                                      <  1:313748/150‑1 (MQ=255)                                            gCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCgg                                                                                                    <  2:33154/150‑1 (MQ=255)                                                     gatgCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGa                                                                                           <  1:616433/147‑1 (MQ=255)                                                        gCTGGCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATaa                                                                                        <  1:203276/150‑1 (MQ=255)                                                         cTGTCGCGTCTTACCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAg                                                                                       <  1:311562/150‑1 (MQ=255)                                                          tGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGAt                                                                                                       >  1:213019/1‑133 (MQ=255)                                                          tGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGAt                                                                                                       <  2:213019/133‑1 (MQ=255)                                                          tGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAgg                                                                                      <  2:311888/150‑1 (MQ=255)                                                                     aTCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGGCAATTGGTGAATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAACGCGGTCAcgccc                                                                           >  2:108485/1‑149 (MQ=255)                                                                      tCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGc                                                                                                                        <  2:548946/104‑1 (MQ=38)                                                                           ccTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTGAACGCCTTATCCg                                                                     <  1:279120/150‑1 (MQ=255)                                                                           ccTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCAT‑AATGATGAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCg                                                                     <  1:51549/150‑1 (MQ=21)                                                                                 aaTAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGt                                                               <  1:174474/150‑1 (MQ=255)                                                                                   tAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATGCGGCGTGAACGCCTTATCCggt                                                                   >  1:264867/1‑143 (MQ=18)                                                                                         gAACCGTAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGc                                                                                     >  1:545437/1‑120 (MQ=255)                                                                                         gAACCGTAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGc                                                                                     <  2:545437/120‑1 (MQ=255)                                                                                         gAACCGTAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCCGATAAGGAGTTCAAGCCCCATCCCGCAAGTGGGTAAAc                                                       >  2:99218/1‑150 (MQ=21)                                                                                            ccaattgCCGGATGCGGCGTAAACGCCTT‑ATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGTCGGATCGGTAGACCGGATAAGGCGTTCAc                                                                               <  1:560854/117‑1 (MQ=21)                                                                                            ccGTAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACACCGCATCCGGCAAGTGGTTAAACCCg                                                    <  1:190178/150‑1 (MQ=255)                                                                                               tAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTc                                                 <  2:483407/150‑1 (MQ=255)                                                                                                    cggactaGGCGTTTACGCCGC‑ATCAGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGTATCGGTATACCGGATAAGGCGTTCACGCCGCTTCCGGCAAGTGGTTAAACCCGCTCAAaca                                            <  1:560444/144‑1 (MQ=25)                                                                                                               tttACGCCGC‑ATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATa                                 >  1:273562/1‑150 (MQ=255)                                                                                                                           cccGGCAATTGATGCATGATCCCTGATGCGACGCTCGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAg                      <  1:163442/149‑1 (MQ=255)                                                                                                                              ggCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGAcc                   >  2:66549/1‑150 (MQ=255)                                                                                                                                    tGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATaca             <  2:273562/150‑1 (MQ=255)                                                                                                                                      gTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATAcaca           >  2:118019/1‑150 (MQ=255)                                                                                                                                              tgCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAacac                                           >  2:187115/1‑110 (MQ=255)                                                                                                                                              tgCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAacac                                           <  1:187115/110‑1 (MQ=255)                                                                                                                                               gCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCa  <  2:321137/150‑1 (MQ=255)                                                                                                                                               gCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCa  <  1:335731/150‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                      CCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGC‑ATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCA  >  NC_000913_3_hsa_tpiA/4027377‑4027667

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.