New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	3289918 =	59 (1.090)	7 (0.140)	5/264	6.9	11.9%	coding (1105/2517 nt)	yraJ	putative outer membrane protein
	?	NC_000913_3_hsa_tpiA	3289945 =	48 (0.930)					coding (1132/2517 nt)	yraJ	putative outer membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCCCTCTTCCAACAGCGGCGATTTAGAAGTCACGATTGAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGAATAATACTTTTACGCTGTATGGCGGCCTGCTCGGTTCTGAAGATTATTATGCGCTGGGGATCGGTATCGGCGGCACACTTGGCGCACT  >  NC_000913_3_hsa_tpiA/3289797‑3290093                                                                                                                                                     |                                                                                                                                                     ccccTCTTCCAACAGCGGCGATTTAGAAGTCACGATTGAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTg                                                                                                                                                      >  2:171143/1‑149 (MQ=255) ccccTCTTCCAACAGCGGCGATTTAGAAGTCACGATTGAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCCGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTg                                                                                                                                                      >  2:849033/1‑149 (MQ=255)           aaCAGCGGCGATTTAGAAGTCACGATTGAAGAAAGTGACGGTACACAACGTCGATTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCGGATGCGAACAg                                                                                                                                            >  1:634369/1‑149 (MQ=255)             cAGCGGCGATTTAGAAGTCACGATTGAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTg                                                                                                                                          <  2:220087/149‑1 (MQ=255)                cggcgATTTAGAAGTCACGATTGAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATa                                                                                                                                       <  2:744182/149‑1 (MQ=255)                cggcgATTTAGAAGTCACGATTGAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATa                                                                                                                                       >  1:940905/1‑149 (MQ=255)                 ggcgATTTAGAAGTCACGATTGAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAg                                                                                                                                      <  1:81959/149‑1 (MQ=255)                         aGAAGTCACGATTGAAGAAAGTGACGGTACACAACGTCGCTTACGTCATTTTTATTCTTCCACTCCCATGATCCAGCGACCTGGGCATCTAAAGTATACCGCGACTGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAAc                                                                                                                              >  2:923982/1‑149 (MQ=255)                                aCGATTGAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATATCAAGGAACCCGAAtt                                                                                                                       >  2:665102/1‑149 (MQ=255)                                aCGATTGAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAAtt                                                                                                                       <  1:923342/149‑1 (MQ=255)                                    ttGAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCt                                                                                                                   >  2:677433/1‑149 (MQ=255)                                       aagaaAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGaa                                                                                                                <  2:940905/149‑1 (MQ=255)                                                aCGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGaa                                                                                                                <  2:254920/140‑1 (MQ=255)                                                aCGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGaa                                                                                                                >  1:254920/1‑140 (MQ=255)                                                  ggTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCAAGGCAat                                                                                                     >  2:432431/1‑149 (MQ=255)                                                  ggTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTCAACCCACGGccaa                                                                                                     >  2:408125/1‑146 (MQ=255)                                                      cacaACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAatatat                                                                                                 >  2:625172/1‑149 (MQ=255)                                                       acaACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATg                                                                                                >  2:574699/1‑149 (MQ=255)                                                       acaACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATg                                                                                                <  1:171143/149‑1 (MQ=255)                                                         agcGTCGCTGTAGCCAGCCTTATTCCTCATTACCCATGATGCAGCGACCTGGGAATCTAAAGTATAGCGCGACCGCTGGACGCTATCGTGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGt                                                                                              <  1:881340/147‑1 (MQ=255)                                                           cgacGCTTTATCCAGCCTTATTCTTCATTACCCCTGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGttt                                                                                            <  2:78901/146‑1 (MQ=255)                                                                 tttATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGCTGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGaataa                                                                                      >  1:856046/1‑149 (MQ=255)                                                                        aGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTCTAGCGCGACCCCTGCACGCTATCGCGCTGATTCAAACAGTGATAGCAAGGAACCCGAATTTGATGAAGCCACGGCACTATCTGGTTTGAATAATCCtttt                                                                               >  1:208380/1‑149 (MQ=255)                                                                               ttcttcATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGAATAATACTTTTACGCTGt                                                                        <  1:424374/149‑1 (MQ=255)                                                                                  ttcCTTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCACACAGTGATAGCAAGGAACCCGACTTTGCTGAAGCCACGGCAATATATGGTTTGGATCATACTTCTACGCTTTATg                                                                     >  2:863152/1‑149 (MQ=255)                                                                                     aTTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGAATAATACTTTTACGCTGTATggcg                                                                  <  1:611408/149‑1 (MQ=255)                                                                                       tACCCAGGATGCAGCGACCGTGGCATCAAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGAATAATACTTTTACGCTGTATggcggc                                                                <  1:406988/149‑1 (MQ=255)                                                                                       gaCCCATGAGGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGAATAATACTTTTACGCTGTATggcggc                                                                <  1:721245/148‑1 (MQ=255)                                                                                          ccATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCaa                                                                                                                                   >  2:119651/1‑79 (MQ=255)                                                                                          ccATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCaa                                                                                                                                   <  1:119651/79‑1 (MQ=255)                                                                                          ccATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGa                                                                                          <  2:570300/120‑1 (MQ=255)                                                                                          ccATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGa                                                                                          >  1:570300/1‑120 (MQ=255)                                                                                           cATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGAATAATACTTTTACGCTGTATGGCGGCCTGc                                                            >  1:250479/1‑149 (MQ=255)                                                                                            atgatgCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGAATAATACTTTTACGCTGTATGGCGGCCTGCt                                                           >  2:817547/1‑149 (MQ=255)                                                                                                  cAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGAATAATACTTTTACGCTGTATGGCGGCCTGCTCGGTTc                                                     >  2:656285/1‑149 (MQ=255)                                                                                                    gCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGAATAATACTTTTACGCTGTATGGCGGCCTGCTCGGtcgtg                                                   >  2:43234/1‑145 (MQ=255)                                                                                                       aCCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAGGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGAATAATACTTTTACGCTGTATGGCGGCCTGCTCGGTTTTGAAg                                                >  2:256998/1‑149 (MQ=255)                                                                                                        ccTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCCACGGCGCCTATTCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGAATAATACTTTTACGCTGTATGGCGGCCTGCTCGGTTCTGAAGa                                               <  1:425721/149‑1 (MQ=255)                                                                                                          tGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGAATAATACTTTTAAGCTGTATGGCGGCCTGCTCGTTTCTGAAGatt                                             >  1:112441/1‑149 (MQ=255)                                                                                                           gggCATCTAAAGTATAGCGGGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCATGGCAATATATGGTTTGAATAATACTTTTACGCTGTATGGCGGCCTGCTCGGTTCTGAAGatta                                            <  2:707068/149‑1 (MQ=255)                                                                                                             gCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGGGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGAATAATATTTTTACGCTGTATGGCGGCCTGCTCGGTTCTGAAGattatt                                          <  2:347217/149‑1 (MQ=255)                                                                                                              cATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATgg                                                                                               >  2:600006/1‑95 (MQ=255)                                                                                                              cATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATgg                                                                                               <  1:600006/95‑1 (MQ=255)                                                                                                              cATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGAATAATACTTTTACGCTGTATGGCGGCCTGCTCGGTTCTGAAGAttatta                                         >  2:542096/1‑149 (MQ=255)                                                                                                               aTCTAAAGTATAGCGCGACCGCTGGACGCTAGTGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGAATAATACTTTTACGCTGTATGGCGGCCTGCTCGGTTCTGAAGATtattat                                        <  2:551826/149‑1 (MQ=255)                                                                                                                tCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGAATAATACTTTTACGCTGTATGGCGGCCTGCTCGGTTCTGAAGATTATTATg                                       <  1:817547/149‑1 (MQ=255)                                                                                                                  tAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGAATAATACTTTTACGCTGTATGGCGGCCTGCTCGGTTCTGAAGATTATTATgcg                                     >  1:398698/1‑149 (MQ=255)                                                                                                                            cgcgACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGAATAATACTTTTACGCTGTATGGCGGCCTGCTCGGTTCTGAAGATTATTATGCGCTGGGGATCg                           <  1:542096/149‑1 (MQ=255)                                                                                                                                                  gcTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGAATAATACTTTTACGCTGTATGGCGGCCTGCTCGGTTCTGAAGATTATTATGCGCTGGTGATCGGTATCGGCGGCACACTTGgcgc     >  1:501833/1‑149 (MQ=255)                                                                                                                                                    tGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGAATAATACTTTTACGCTGTCTGGAGGCCTGCTCGGTTCTGAAGAGTATTATGGGCAGGGGATCGGTATCGCCGGCAGACTTGgcgccc   >  2:759112/1‑147 (MQ=255)                                                                                                                                                     gATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGAATAATACTTTTACGCTGTATGGCGGCCTGCTCGGTTCTGAAGATTATTATGCGCTGGGGATCGGTGTCGGCGGCACACTTGGCGCACt  >  1:247607/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CCCCTCTTCCAACAGCGGCGATTTAGAAGTCACGATTGAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGAATAATACTTTTACGCTGTATGGCGGCCTGCTCGGTTCTGAAGATTATTATGCGCTGGGGATCGGTATCGGCGGCACACTTGGCGCACT  >  NC_000913_3_hsa_tpiA/3289797‑3290093

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.