| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 2729630 = | NA (NA) | 10 (0.220) | 9/270 | 4.2 | NA | noncoding (1528/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_hsa_tpiA | 2729652 = | NA (NA) | noncoding (1506/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAG > NC_000913_3_hsa_tpiA/2729515‑2729709 | ggCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGa > 2:528235/1‑149 (MQ=255) gCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGtt > 2:716469/1‑144 (MQ=255) gCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGtt < 1:716469/144‑1 (MQ=255) tttATTCTCGCTAGCCTCACTTCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTTTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGATGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACtt < 2:408647/148‑1 (MQ=14) gCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATg > 1:554554/1‑149 (MQ=255) cACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATc < 1:561103/149‑1 (MQ=39) ccAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACaaa > 2:677/1‑149 (MQ=40) aaCGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAATGGTAAgcg > 2:488067/1‑149 (MQ=255) cTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAGAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTaa < 2:781556/141‑1 (MQ=255) cTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTaa > 1:781556/1‑141 (MQ=39) tATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGaa < 1:459892/149‑1 (MQ=35) tATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGAAGGTGATCCAACCGCAAGTTCCCCTACGGTTTCTTACTTTTGTCTTTACCCCAGTCATGAATCTCAAAGTGGTAAGGGCCCCCCCgca > 1:158399/1‑147 (MQ=11) aTTCACTTTTCCTCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTATCGCTTCCGA‑TTTATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAg < 1:607640/149‑1 (MQ=11) aTTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGtt < 1:56895/99‑1 (MQ=37) aTTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGtt > 2:56895/1‑99 (MQ=37) aTTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAg < 1:11607/149‑1 (MQ=34) cACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCAcc < 2:381219/107‑1 (MQ=32) cACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCAcc > 1:381219/1‑107 (MQ=32) cACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATc > 1:609753/1‑120 (MQ=32) cACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATc < 2:609753/120‑1 (MQ=32) | GGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA‑AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAG > NC_000913_3_hsa_tpiA/2729515‑2729709 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |