| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 2729443 = | 21 (0.350) | 4 (0.070) | 4/260 | 8.0 | 15.8% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913_3_hsa_tpiA | 2729485 = | 23 (0.420) | intergenic (‑41/+131) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGA > NC_000913_3_hsa_tpiA/2729295‑2729589 | aaaTATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGAATTTCACTCACAAACCAGTAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGa < 1:959600/149‑1 (MQ=255) cAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGc < 2:930922/149‑1 (MQ=255) cAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGc < 1:800549/149‑1 (MQ=255) actgagcAGTCTGTTTTGAGATATTGAGGGCGGCGACTTTCCCTCACATACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGTCACGAAAATTGCTTAt < 2:952933/143‑1 (MQ=11) gTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGCGCCTCTAGACGAAGGGGAAACGAAAATTGCTTATCACGCGtt < 2:616659/149‑1 (MQ=25) cTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACTCCCGTGAAAGGGCGGTGTCCCGGGCCTCTGGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGc < 1:938059/149‑1 (MQ=255) ttttGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCACTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCGCGCGTTGAGTg > 1:103676/1‑149 (MQ=12) ttGAGATATTGAGGTCGGCGACTTTCACTCACAAAACAGCAAGGGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGTGCGGTGTCTTGGGCCTATAGACGGAGGGGACACGAAAATTGGTTATCACGCGTGGCGGGat > 2:274063/1‑149 (MQ=11) tatTGAGGTCGGCGACTTTCGCTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTc < 1:33497/149‑1 (MQ=17) ggCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTa < 1:716843/149‑1 (MQ=11) cGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTAtt < 2:886813/149‑1 (MQ=32) cGGTGGCCTGGGCCTCAAGACGAAGGGGACACGAAAATTGCTTATCAAGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGACTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTCGCTAtt < 2:700365/149‑1 (MQ=11) tcccgtgCCTCTAGACGAAGGGGAAACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTTTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtt < 1:922773/143‑1 (MQ=255) cTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtttt > 1:106088/1‑149 (MQ=32) tGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtc > 1:857058/1‑149 (MQ=33) gggCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTGTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtca < 1:895027/149‑1 (MQ=25) ctAGACGAAGGGGATACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGAc < 1:143430/149‑1 (MQ=38) gACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAAt < 2:34403/149‑1 (MQ=39) ggggACACGAAAATGGGTTAACACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtgtgt < 2:103676/149‑1 (MQ=255) gggACGCGACCATTGCTTAGCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTTTTTTATAGAAATCGAACGGCCTGGTTCTCTTCGGACTAACTCCCAACGCGTTAACTCCTTGCTATTCATTTTTCATCAGCAAATCtgtgtg > 2:904027/1‑149 (MQ=11) ggACACGAAAATTGCTTATCACGTGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGa < 2:831363/149‑1 (MQ=38) | AAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGA > NC_000913_3_hsa_tpiA/2729295‑2729589 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |